Analysis of interatomic Contacts of Structural Units in PDB entry:
8RPR


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8RPR entry

There is 1 chain in PDB entry 8RPR (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 2ARG 339
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 8RPR. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
2 19Right-handed alpha
Helix 2
AA2
A
20 38Right-handed alpha
Helix 3
AA3
A
39 43Right-handed 310
Helix 4
AA4
A
51 58Right-handed alpha
Helix 5
AA5
A
61 75Right-handed alpha
Helix 6
AA6
A
91 107Right-handed alpha
Helix 7
AA7
A
109 115Right-handed alpha
Helix 8
AA8
A
115 122Right-handed alpha
Helix 9
AA9
A
122 130Right-handed alpha
Helix 10
AB1
A
133 149Right-handed alpha
Helix 11
AB2
A
149 160Right-handed alpha
Helix 12
AB3
A
173 181Right-handed alpha
Helix 13
AB4
A
194 209Right-handed alpha
Helix 14
AB5
A
221 225Right-handed 310
Helix 15
AB6
A
242 247Right-handed 310
Helix 16
AB7
A
250 265Right-handed alpha
Helix 17
AB8
A
285 299Right-handed alpha
Helix 18
AB9
A
306 317Right-handed alpha
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There are 2 sheets in PDB entry 8RPR. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
48 50first strand
Strand 2
A
85 88anti-parallel
Strand 3
A
78 80anti-parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
214 215first strand
Strand 2
A
187 191parallel
Strand 3
A
164 168parallel
Strand 4
A
236 240parallel
Strand 5
A
270 276parallel
Strand 6
A
332 338anti-parallel
Strand 7
A
321 326anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il