Analysis of interatomic Contacts of Structural Units in PDB entry:
8RQ3


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8RQ3 entry

There is 1 chain in PDB entry 8RQ3 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1GLU 1530
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 61 helices in PDB entry 8RQ3. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
1 6Right-handed 310
Helix 2
AA2
A
23 51Right-handed alpha
Helix 3
AA3
A
61 90Right-handed alpha
Helix 4
AA4
A
100 118Right-handed alpha
Helix 5
AA5
A
119 123Right-handed 310
Helix 6
AA6
A
128 155Right-handed alpha
Helix 7
AA7
A
160 183Right-handed alpha
Helix 8
AA8
A
192 196Right-handed 310
Helix 9
AA9
A
198 204Right-handed alpha
Helix 10
AB1
A
208 218Right-handed alpha
Helix 11
AB2
A
233 265Right-handed alpha
Helix 12
AB3
A
305 332Right-handed alpha
Helix 13
AB4
A
334 348Right-handed alpha
Helix 14
AB5
A
353 401Right-handed alpha
Helix 15
AB6
A
404 409Right-handed alpha
Helix 16
AB7
A
412 422Right-handed alpha
Helix 17
AB8
A
422 433Right-handed alpha
Helix 18
AB9
A
435 456Right-handed alpha
Helix 19
AC1
A
458 504Right-handed alpha
Helix 20
AC2
A
504 511Right-handed alpha
Helix 21
AC3
A
513 564Right-handed alpha
Helix 22
AC4
A
571 586Right-handed alpha
Helix 23
AC5
A
587 613Right-handed alpha
Helix 24
AC6
A
672 682Right-handed alpha
Helix 25
AC7
A
711 717Right-handed alpha
Helix 26
AC8
A
722 733Right-handed alpha
Helix 27
AC9
A
735 742Right-handed alpha
Helix 28
AD1
A
758 774Right-handed alpha
Helix 29
AD2
A
788 800Right-handed alpha
Helix 30
AD3
A
820 824Right-handed 310
Helix 31
AD4
A
840 847Right-handed alpha
Helix 32
AD5
A
849 858Right-handed alpha
Helix 33
AD6
A
859 861Right-handed 310
Helix 34
AD7
A
900 912Right-handed alpha
Helix 35
AD8
A
959 971Right-handed alpha
Helix 36
AD9
A
972 998Right-handed alpha
Helix 37
AE1
A
999 1004Right-handed 310
Helix 38
AE2
A
1008 1011Right-handed 310
Helix 39
AE3
A
1012 1061Right-handed alpha
Helix 40
AE4
A
1064 1071Right-handed alpha
Helix 41
AE5
A
1072 1082Right-handed alpha
Helix 42
AE6
A
1083 1089Right-handed alpha
Helix 43
AE7
A
1089 1116Right-handed alpha
Helix 44
AE8
A
1117 1121Right-handed 310
Helix 45
AE9
A
1122 1165Right-handed alpha
Helix 46
AF1
A
1165 1173Right-handed alpha
Helix 47
AF2
A
1174 1225Right-handed alpha
Helix 48
AF3
A
1230 1242Right-handed alpha
Helix 49
AF4
A
1244 1262Right-handed alpha
Helix 50
AF5
A
1262 1273Right-handed alpha
Helix 51
AF6
A
1335 1343Right-handed alpha
Helix 52
AF7
A
1362 1364Right-handed 310
Helix 53
AF8
A
1365 1372Right-handed alpha
Helix 54
AF9
A
1387 1392Right-handed alpha
Helix 55
AG1
A
1398 1409Right-handed alpha
Helix 56
AG2
A
1411 1416Right-handed alpha
Helix 57
AG3
A
1434 1450Right-handed alpha
Helix 58
AG4
A
1464 1479Right-handed alpha
Helix 59
AG5
A
1490 1494Right-handed 310
Helix 60
AG6
A
1513 1519Right-handed alpha
Helix 61
AG7
A
1522 1528Right-handed alpha
Back to top of page

There are 7 sheets in PDB entry 8RQ3. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
623 626first strand
Strand 2
A
685 694parallel
Strand 3
A
633 641anti-parallel
Strand 4
A
650 657anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
697 700first strand
Strand 2
A
777 780parallel
Strand 3
A
810 814parallel
Strand 4
A
663 667parallel
Strand 5
A
827 831parallel
Strand 6
A
834 839anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
709 710first strand
Strand 2
A
749 750anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1313 1316first strand
Strand 2
A
1296 1303anti-parallel
Strand 3
A
1319 1320anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1313 1316first strand
Strand 2
A
1296 1303anti-parallel
Strand 3
A
1349 1356anti-parallel
Strand 4
A
1359 1360anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1375 1376first strand
Strand 2
A
1453 1457parallel
Strand 3
A
1483 1487parallel
Strand 4
A
1325 1329parallel
Strand 5
A
1499 1504parallel
Strand 6
A
1507 1508anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1385 1386first strand
Strand 2
A
1425 1426anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il