Analysis of interatomic Contacts of Structural Units in PDB entry:
8RQ4


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8RQ4 entry

There is 1 chain in PDB entry 8RQ4 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1GLU 1530
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 49 helices in PDB entry 8RQ4. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
11 16Right-handed alpha
Helix 2
AA2
A
23 41Right-handed alpha
Helix 3
AA3
A
42 53Right-handed alpha
Helix 4
AA4
A
61 88Right-handed alpha
Helix 5
AA5
A
96 120Right-handed alpha
Helix 6
AA6
A
128 155Right-handed alpha
Helix 7
AA7
A
160 183Right-handed alpha
Helix 8
AA8
A
192 196Right-handed 310
Helix 9
AA9
A
198 205Right-handed alpha
Helix 10
AB1
A
208 218Right-handed alpha
Helix 11
AB2
A
233 265Right-handed alpha
Helix 12
AB3
A
305 332Right-handed alpha
Helix 13
AB4
A
334 348Right-handed alpha
Helix 14
AB5
A
353 401Right-handed alpha
Helix 15
AB6
A
404 411Right-handed alpha
Helix 16
AB7
A
412 456Right-handed alpha
Helix 17
AB8
A
459 504Right-handed alpha
Helix 18
AB9
A
504 512Right-handed alpha
Helix 19
AC1
A
513 565Right-handed alpha
Helix 20
AC2
A
571 591Right-handed alpha
Helix 21
AC3
A
591 614Right-handed alpha
Helix 22
AC4
A
672 682Right-handed alpha
Helix 23
AC5
A
710 717Right-handed alpha
Helix 24
AC6
A
722 733Right-handed alpha
Helix 25
AC7
A
735 742Right-handed alpha
Helix 26
AC8
A
758 773Right-handed alpha
Helix 27
AC9
A
788 800Right-handed alpha
Helix 28
AD1
A
820 824Right-handed 310
Helix 29
AD2
A
840 848Right-handed alpha
Helix 30
AD3
A
849 859Right-handed alpha
Helix 31
AD4
A
959 971Right-handed alpha
Helix 32
AD5
A
971 1006Right-handed alpha
Helix 33
AD6
A
1012 1061Right-handed alpha
Helix 34
AD7
A
1064 1071Right-handed alpha
Helix 35
AD8
A
1072 1113Right-handed alpha
Helix 36
AD9
A
1118 1165Right-handed alpha
Helix 37
AE1
A
1165 1173Right-handed alpha
Helix 38
AE2
A
1174 1225Right-handed alpha
Helix 39
AE3
A
1230 1242Right-handed alpha
Helix 40
AE4
A
1244 1261Right-handed alpha
Helix 41
AE5
A
1262 1273Right-handed alpha
Helix 42
AE6
A
1334 1344Right-handed alpha
Helix 43
AE7
A
1366 1372Right-handed alpha
Helix 44
AE8
A
1387 1392Right-handed alpha
Helix 45
AE9
A
1398 1409Right-handed alpha
Helix 46
AF1
A
1411 1418Right-handed alpha
Helix 47
AF2
A
1434 1450Right-handed alpha
Helix 48
AF3
A
1464 1479Right-handed alpha
Helix 49
AF4
A
1513 1520Right-handed alpha
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There are 10 sheets in PDB entry 8RQ4. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
623 626first strand
Strand 2
A
691 694parallel
Strand 3
A
633 635anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
639 641first strand
Strand 2
A
685 688anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
697 700first strand
Strand 2
A
777 781parallel
Strand 3
A
810 814parallel
Strand 4
A
662 667parallel
Strand 5
A
829 831parallel
Strand 6
A
834 835anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1318 1320first strand
Strand 2
A
1296 1298anti-parallel
Strand 3
A
1354 1356anti-parallel
Strand 4
A
1359 1360anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1302 1304first strand
Strand 2
A
1311 1314anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1326 1328first strand
Strand 2
A
1499 1501parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1374 1375first strand
Strand 2
A
1453 1455parallel
Strand 3
A
1483 1484parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1385 1386first strand
Strand 2
A
1425 1426anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1457 1458first strand
Strand 2
A
1487 1488parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1503 1504first strand
Strand 2
A
1507 1508anti-parallel
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