Analysis of interatomic Contacts of Structural Units in PDB entry:
8RQF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8RQF entry

There are 5 chains in PDB entry 8RQF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 11LYS 311
H
 VAL 2LYS 214
L
 SER 0ARG 211
K
 VAL 2SER 113
B
 THR 3GLY 48
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 22 helices in PDB entry 8RQF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
21 43Right-handed alpha
Helix 2
AA2
A
47 57Right-handed alpha
Helix 3
AA3
A
59 83Right-handed alpha
Helix 4
AA4
A
86 98Right-handed alpha
Helix 5
AA5
A
104 111Right-handed alpha
Helix 6
AA6
A
115 129Right-handed alpha
Helix 7
AA7
A
129 142Right-handed alpha
Helix 8
AA8
A
155 180Right-handed alpha
Helix 9
AA9
A
183 211Right-handed alpha
Helix 10
AB1
A
212 217Right-handed 310
Helix 11
AB2
A
219 244Right-handed alpha
Helix 12
AB3
A
249 260Right-handed alpha
Helix 13
AB4
A
263 274Right-handed alpha
Helix 14
AB5
A
275 280Right-handed alpha
Helix 15
AB6
A
281 283Right-handed 310
Helix 16
AB7
A
284 311Right-handed alpha
Helix 17
AB8
H
83 87Right-handed 310
Helix 18
AB9
H
156 158Right-handed 310
Helix 19
AC1
H
187 192Right-handed 310
Helix 20
AC2
L
121 128Right-handed alpha
Helix 21
AC3
L
182 189Right-handed alpha
Helix 22
AC4
K
83 87Right-handed 310
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There are 14 sheets in PDB entry 8RQF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
6 7first strand
Strand 2
H
18 22anti-parallel
Strand 3
H
77 82anti-parallel
Strand 4
H
67 72anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
11 12first strand
Strand 2
H
107 111parallel
Strand 3
H
88 93anti-parallel
Strand 4
H
34 39anti-parallel
Strand 5
H
45 52anti-parallel
Strand 6
H
56 59anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
97 98first strand
Strand 2
H
100 100anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
120 123first strand
Strand 2
H
140 145anti-parallel
Strand 3
H
176 181anti-parallel
Strand 4
H
164 165anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
120 123first strand
Strand 2
H
140 145anti-parallel
Strand 3
H
176 181anti-parallel
Strand 4
H
169 170anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
136 137first strand
Strand 2
H
183 184anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
151 154first strand
Strand 2
H
196 200anti-parallel
Strand 3
H
205 207anti-parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
19 24first strand
Strand 2
L
70 75anti-parallel
Strand 3
L
62 67anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
45 48first strand
Strand 2
L
35 38anti-parallel
Strand 3
L
85 88anti-parallel
Strand 4
L
102 103anti-parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
114 118first strand
Strand 2
L
130 139anti-parallel
Strand 3
L
173 181anti-parallel
Strand 4
L
159 163anti-parallel
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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
153 154first strand
Strand 2
L
145 150anti-parallel
Strand 3
L
191 197anti-parallel
Strand 4
L
205 210anti-parallel
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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
K
11 12first strand
Strand 2
K
107 111parallel
Strand 3
K
88 95anti-parallel
Strand 4
K
33 39anti-parallel
Strand 5
K
45 51anti-parallel
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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
K
11 12first strand
Strand 2
K
107 111parallel
Strand 3
K
88 95anti-parallel
Strand 4
K
100 103anti-parallel
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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
K
18 22first strand
Strand 2
K
77 82anti-parallel
Strand 3
K
68 72anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il