Analysis of interatomic Contacts of Structural Units in PDB entry:
8RQH


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8RQH entry

There are 2 chains in PDB entry 8RQH (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 3PRO 394
B
 LYS 4PRO 394
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 42 helices in PDB entry 8RQH. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
14 26Right-handed alpha
Helix 2
AA2
A
50 60Right-handed alpha
Helix 3
AA3
A
62 67Right-handed alpha
Helix 4
AA4
A
94 101Right-handed alpha
Helix 5
AA5
A
109 121Right-handed alpha
Helix 6
AA6
A
164 172Right-handed alpha
Helix 7
AA7
A
191 194Right-handed 310
Helix 8
AA8
A
196 201Right-handed 310
Helix 9
AA9
A
220 222Right-handed 310
Helix 10
AB1
A
246 254Right-handed alpha
Helix 11
AB2
A
258 266Right-handed alpha
Helix 12
AB3
A
294 299Right-handed alpha
Helix 13
AB4
A
301 305Right-handed 310
Helix 14
AB5
A
306 323Right-handed alpha
Helix 15
AB6
A
324 325Right-handed 310
Helix 16
AB7
A
326 328Right-handed 310
Helix 17
AB8
A
329 360Right-handed alpha
Helix 18
AB9
A
364 376Right-handed alpha
Helix 19
AC1
A
376 381Right-handed alpha
Helix 20
AC2
A
381 386Right-handed alpha
Helix 21
AC3
A
389 393Right-handed 310
Helix 22
AC4
B
14 26Right-handed alpha
Helix 23
AC5
B
50 60Right-handed alpha
Helix 24
AC6
B
62 67Right-handed alpha
Helix 25
AC7
B
94 101Right-handed alpha
Helix 26
AC8
B
108 121Right-handed alpha
Helix 27
AC9
B
164 172Right-handed alpha
Helix 28
AD1
B
191 193Right-handed 310
Helix 29
AD2
B
196 201Right-handed 310
Helix 30
AD3
B
220 222Right-handed 310
Helix 31
AD4
B
246 254Right-handed alpha
Helix 32
AD5
B
258 266Right-handed alpha
Helix 33
AD6
B
294 299Right-handed alpha
Helix 34
AD7
B
301 305Right-handed 310
Helix 35
AD8
B
306 323Right-handed alpha
Helix 36
AD9
B
324 325Right-handed 310
Helix 37
AE1
B
326 328Right-handed 310
Helix 38
AE2
B
329 360Right-handed alpha
Helix 39
AE3
B
364 376Right-handed alpha
Helix 40
AE4
B
376 381Right-handed alpha
Helix 41
AE5
B
381 386Right-handed alpha
Helix 42
AE6
B
389 393Right-handed 310
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There are 8 sheets in PDB entry 8RQH. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
125 126first strand
Strand 2
A
31 34parallel
Strand 3
A
8 11parallel
Strand 4
A
155 158parallel
Strand 5
A
290 292parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
46 49first strand
Strand 2
A
105 108anti-parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
86 91first strand
Strand 2
A
75 80anti-parallel
Strand 3
A
204 209parallel
Strand 4
A
212 219anti-parallel
Strand 5
A
224 232anti-parallel
Strand 6
A
177 189anti-parallel
Strand 7
A
272 278anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
131 136first strand
Strand 2
A
141 145anti-parallel
Strand 3
A
150 153anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
125 126first strand
Strand 2
B
31 34parallel
Strand 3
B
8 11parallel
Strand 4
B
155 158parallel
Strand 5
B
290 292parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
47 49first strand
Strand 2
B
105 107anti-parallel
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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
86 91first strand
Strand 2
B
75 80anti-parallel
Strand 3
B
204 209parallel
Strand 4
B
212 219anti-parallel
Strand 5
B
224 232anti-parallel
Strand 6
B
177 189anti-parallel
Strand 7
B
272 278anti-parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
131 136first strand
Strand 2
B
141 145anti-parallel
Strand 3
B
150 153anti-parallel
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