Analysis of interatomic Contacts of Structural Units in PDB entry:
8RQL

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8RQL entry

There are 5 chains in PDB entry 8RQL (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
R	GLY 3	LYS 303
A	THR 4	PHE 229
B	GLU 20	ASN 357
G	ALA 7	PHE 66
S	ASP 1	LEU 235

There are 28 helices in PDB entry 8RQL. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	R	3	38	Right-handed alpha
Helix 2	AA2	R	42	69	Right-handed alpha
Helix 3	AA3	R	72	77	Right-handed alpha
Helix 4	AA4	R	78	112	Right-handed alpha
Helix 5	AA5	R	116	125	Right-handed alpha
Helix 6	AA6	R	125	158	Right-handed alpha
Helix 7	AA7	R	176	183	Right-handed alpha
Helix 8	AA8	R	187	212	Right-handed alpha
Helix 9	AA9	R	224	253	Right-handed alpha
Helix 10	AB1	R	260	282	Right-handed alpha
Helix 11	AB2	R	284	303	Right-handed alpha
Helix 12	AB3	A	6	32	Right-handed alpha
Helix 13	AB4	A	96	102	Right-handed 310
Helix 14	AB5	A	114	130	Right-handed alpha
Helix 15	AB6	A	132	136	Right-handed 310
Helix 16	AB7	A	145	156	Right-handed alpha
Helix 17	AB8	A	157	162	Right-handed 310
Helix 18	AB9	A	170	185	Right-handed alpha
Helix 19	AC1	A	205	227	Right-handed alpha
Helix 20	AC2	B	21	42	Right-handed alpha
Helix 21	AC3	B	46	51	Right-handed alpha
Helix 22	AC4	B	52	54	Right-handed 310
Helix 23	AC5	G	8	24	Right-handed alpha
Helix 24	AC6	G	29	44	Right-handed alpha
Helix 25	AC7	G	55	59	Right-handed 310
Helix 26	AC8	S	28	32	Right-handed 310
Helix 27	AC9	S	53	56	Right-handed 310
Helix 28	AD1	S	87	91	Right-handed 310

There are 14 sheets in PDB entry 8RQL. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	54	55	first strand
Strand 2	A	70	75	anti-parallel
Strand 3	A	80	85	anti-parallel
Strand 4	A	35	38	parallel
Strand 5	A	105	106	parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	109	111	first strand
Strand 2	A	140	144	parallel
Strand 3	A	195	197	parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	64	68	first strand
Strand 2	B	353	356	anti-parallel
Strand 3	B	344	347	anti-parallel
Strand 4	B	334	337	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	75	80	first strand
Strand 2	B	86	91	anti-parallel
Strand 3	B	95	100	anti-parallel
Strand 4	B	106	111	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	117	122	first strand
Strand 2	B	128	133	anti-parallel
Strand 3	B	137	142	anti-parallel
Strand 4	B	151	157	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	163	168	first strand
Strand 2	B	173	178	anti-parallel
Strand 3	B	182	187	anti-parallel
Strand 4	B	192	198	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	204	209	first strand
Strand 2	B	215	220	anti-parallel
Strand 3	B	225	229	anti-parallel
Strand 4	B	235	239	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	246	251	first strand
Strand 2	B	257	262	anti-parallel
Strand 3	B	267	271	anti-parallel
Strand 4	B	276	281	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	290	295	first strand
Strand 2	B	301	306	anti-parallel
Strand 3	B	311	315	anti-parallel
Strand 4	B	321	324	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	3	7	first strand
Strand 2	S	18	25	anti-parallel
Strand 3	S	78	83	anti-parallel
Strand 4	S	68	73	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	11	12	first strand
Strand 2	S	115	119	parallel
Strand 3	S	92	99	anti-parallel
Strand 4	S	33	39	anti-parallel
Strand 5	S	45	51	anti-parallel
Strand 6	S	58	60	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	128	129	first strand
Strand 2	S	143	149	anti-parallel
Strand 3	S	199	204	anti-parallel
Strand 4	S	191	196	anti-parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	134	136	first strand
Strand 2	S	231	234	parallel
Strand 3	S	213	219	anti-parallel
Strand 4	S	162	167	anti-parallel
Strand 5	S	174	178	anti-parallel
Strand 6	S	182	183	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	134	136	first strand
Strand 2	S	231	234	parallel
Strand 3	S	213	219	anti-parallel
Strand 4	S	226	227	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8RQL

Analysis of interatomic Contacts of Structural Units in PDB entry:
8RQL