Analysis of interatomic Contacts of Structural Units in PDB entry:
8RR1


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8RR1 entry

There are 7 chains in PDB entry 8RR1 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 7PRO 261
B
 SER 7PRO 261
C
 SER 7PRO 261
D
 SER 7PRO 261
E
 GLY 54ALA 792
F
 ALA 92LEU 385
T
 G 1 G 90
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 82 helices in PDB entry 8RR1. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
21 34Right-handed alpha
Helix 2
AA2
A
46 55Right-handed alpha
Helix 3
AA3
A
67 83Right-handed alpha
Helix 4
AA4
A
110 137Right-handed alpha
Helix 5
AA5
A
155 159Right-handed 310
Helix 6
AA6
A
165 186Right-handed alpha
Helix 7
AA7
A
205 209Right-handed 310
Helix 8
AA8
A
210 220Right-handed alpha
Helix 9
AA9
A
229 243Right-handed alpha
Helix 10
AB1
B
20 33Right-handed alpha
Helix 11
AB2
B
42 45Right-handed 310
Helix 12
AB3
B
46 55Right-handed alpha
Helix 13
AB4
B
67 83Right-handed alpha
Helix 14
AB5
B
110 137Right-handed alpha
Helix 15
AB6
B
155 159Right-handed 310
Helix 16
AB7
B
166 187Right-handed alpha
Helix 17
AB8
B
203 208Right-handed alpha
Helix 18
AB9
B
210 220Right-handed alpha
Helix 19
AC1
B
229 243Right-handed alpha
Helix 20
AC2
C
20 33Right-handed alpha
Helix 21
AC3
C
42 45Right-handed 310
Helix 22
AC4
C
46 55Right-handed alpha
Helix 23
AC5
C
67 83Right-handed alpha
Helix 24
AC6
C
110 122Right-handed alpha
Helix 25
AC7
C
122 137Right-handed alpha
Helix 26
AC8
C
155 159Right-handed 310
Helix 27
AC9
C
165 186Right-handed alpha
Helix 28
AD1
C
203 208Right-handed alpha
Helix 29
AD2
C
210 221Right-handed alpha
Helix 30
AD3
C
229 243Right-handed alpha
Helix 31
AD4
D
21 33Right-handed alpha
Helix 32
AD5
D
42 45Right-handed 310
Helix 33
AD6
D
46 55Right-handed alpha
Helix 34
AD7
D
67 83Right-handed alpha
Helix 35
AD8
D
110 137Right-handed alpha
Helix 36
AD9
D
155 159Right-handed 310
Helix 37
AE1
D
165 187Right-handed alpha
Helix 38
AE2
D
203 207Right-handed 310
Helix 39
AE3
D
212 221Right-handed alpha
Helix 40
AE4
D
229 243Right-handed alpha
Helix 41
AE5
E
90 98Right-handed alpha
Helix 42
AE6
E
114 119Right-handed alpha
Helix 43
AE7
E
120 132Right-handed alpha
Helix 44
AE8
E
143 152Right-handed alpha
Helix 45
AE9
E
313 315Right-handed 310
Helix 46
AF1
E
316 323Right-handed alpha
Helix 47
AF2
E
323 331Right-handed alpha
Helix 48
AF3
E
345 350Right-handed alpha
Helix 49
AF4
E
351 360Right-handed alpha
Helix 50
AF5
E
379 391Right-handed alpha
Helix 51
AF6
E
442 452Right-handed alpha
Helix 52
AF7
E
455 467Right-handed alpha
Helix 53
AF8
E
519 529Right-handed alpha
Helix 54
AF9
E
531 538Right-handed alpha
Helix 55
AG1
E
554 570Right-handed alpha
Helix 56
AG2
E
582 595Right-handed alpha
Helix 57
AG3
E
598 600Right-handed 310
Helix 58
AG4
E
608 611Right-handed 310
Helix 59
AG5
E
618 633Right-handed alpha
Helix 60
AG6
E
670 677Right-handed alpha
Helix 61
AG7
E
690 692Right-handed 310
Helix 62
AG8
E
693 700Right-handed alpha
Helix 63
AG9
E
704 716Right-handed alpha
Helix 64
AH1
E
755 757Right-handed 310
Helix 65
AH2
E
758 763Right-handed alpha
Helix 66
AH3
E
763 771Right-handed alpha
Helix 67
AH4
E
771 792Right-handed alpha
Helix 68
AH5
F
93 105Right-handed alpha
Helix 69
AH6
F
113 122Right-handed alpha
Helix 70
AH7
F
125 154Right-handed alpha
Helix 71
AH8
F
182 202Right-handed alpha
Helix 72
AH9
F
210 213Right-handed 310
Helix 73
AI1
F
216 237Right-handed alpha
Helix 74
AI2
F
252 263Right-handed alpha
Helix 75
AI3
F
264 268Right-handed 310
Helix 76
AI4
F
277 281Right-handed 310
Helix 77
AI5
F
283 285Right-handed 310
Helix 78
AI6
F
320 329Right-handed alpha
Helix 79
AI7
F
337 341Right-handed alpha
Helix 80
AI8
F
352 365Right-handed alpha
Helix 81
AI9
F
368 373Right-handed alpha
Helix 82
AJ1
F
374 376Right-handed 310
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There are 14 sheets in PDB entry 8RR1. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
58 62first strand
Strand 2
A
36 41parallel
Strand 3
A
12 16parallel
Strand 4
A
87 90parallel
Strand 5
A
148 153parallel
Strand 6
A
191 198parallel
Strand 7
A
250 253parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
101 102first strand
Strand 2
A
107 108anti-parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
58 62first strand
Strand 2
B
36 41parallel
Strand 3
B
12 16parallel
Strand 4
B
87 90parallel
Strand 5
B
148 153parallel
Strand 6
B
191 197parallel
Strand 7
B
250 252parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
101 102first strand
Strand 2
B
107 108anti-parallel
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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
58 62first strand
Strand 2
C
36 41parallel
Strand 3
C
12 16parallel
Strand 4
C
87 90parallel
Strand 5
C
148 153parallel
Strand 6
C
191 198parallel
Strand 7
C
250 253parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
101 102first strand
Strand 2
C
107 108anti-parallel
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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
58 62first strand
Strand 2
D
36 41parallel
Strand 3
D
12 16parallel
Strand 4
D
87 90parallel
Strand 5
D
148 153parallel
Strand 6
D
191 196parallel
Strand 7
D
250 251parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
101 102first strand
Strand 2
D
107 108anti-parallel
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There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
162 167first strand
Strand 2
E
135 140parallel
Strand 3
E
105 109parallel
Strand 4
E
82 85parallel
Strand 5
E
72 78anti-parallel
Strand 6
E
58 65anti-parallel
Strand 7
E
424 426anti-parallel
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There are 7 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
173 174first strand
Strand 2
E
178 186anti-parallel
Strand 3
E
239 247anti-parallel
Strand 4
E
305 310anti-parallel
Strand 5
E
339 343parallel
Strand 6
E
366 369parallel
Strand 7
E
417 418parallel
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There are 7 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
602 606first strand
Strand 2
E
576 580parallel
Strand 3
E
539 543parallel
Strand 4
E
510 516parallel
Strand 5
E
501 507anti-parallel
Strand 6
E
482 487anti-parallel
Strand 7
E
751 753anti-parallel
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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
634 638first strand
Strand 2
E
651 655anti-parallel
Strand 3
E
660 663anti-parallel
Strand 4
E
682 686parallel
Strand 5
E
719 723parallel
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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
272 273first strand
Strand 2
F
242 246parallel
Strand 3
F
204 208parallel
Strand 4
F
306 310parallel
Strand 5
F
287 290parallel
Strand 6
F
332 334parallel
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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
342 344first strand
Strand 2
F
381 384anti-parallel
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