Analysis of interatomic Contacts of Structural Units in PDB entry:
8RRH

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8RRH entry

There are 11 chains in PDB entry 8RRH (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	GLN 272
B	MET 273	LYS 571
C	MET 572	GLN 843
D	MET 844	LYS 1142
E	MET 1143	GLN 1414
F	MET 1415	LYS 1713
G	MET 1714	GLN 1985
H	MET 1986	LYS 2284
I	MET 2285	GLN 2556
J	MET 2557	LYS 2855
K	MET 2856	GLN 3127

There are 71 helices in PDB entry 8RRH. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	1	26	Right-handed alpha
Helix 2	AA2	A	102	110	Right-handed alpha
Helix 3	AA3	A	113	134	Right-handed alpha
Helix 4	AA4	A	135	142	Right-handed alpha
Helix 5	AA5	A	142	162	Right-handed alpha
Helix 6	AA6	A	175	252	Right-handed alpha
Helix 7	AA7	B	290	311	Right-handed alpha
Helix 8	AA8	B	388	396	Right-handed alpha
Helix 9	AA9	B	399	418	Right-handed alpha
Helix 10	AB1	B	421	428	Right-handed alpha
Helix 11	AB2	B	428	447	Right-handed alpha
Helix 12	AB3	B	461	514	Right-handed alpha
Helix 13	AB4	B	516	538	Right-handed alpha
Helix 14	AB5	C	573	597	Right-handed alpha
Helix 15	AB6	C	673	681	Right-handed alpha
Helix 16	AB7	C	684	703	Right-handed alpha
Helix 17	AB8	C	706	713	Right-handed alpha
Helix 18	AB9	C	713	733	Right-handed alpha
Helix 19	AC1	C	746	823	Right-handed alpha
Helix 20	AC2	D	861	882	Right-handed alpha
Helix 21	AC3	D	959	967	Right-handed alpha
Helix 22	AC4	D	970	991	Right-handed alpha
Helix 23	AC5	D	992	999	Right-handed alpha
Helix 24	AC6	D	999	1018	Right-handed alpha
Helix 25	AC7	D	1033	1085	Right-handed alpha
Helix 26	AC8	D	1089	1109	Right-handed alpha
Helix 27	AC9	E	1144	1168	Right-handed alpha
Helix 28	AD1	E	1244	1252	Right-handed alpha
Helix 29	AD2	E	1255	1276	Right-handed alpha
Helix 30	AD3	E	1277	1284	Right-handed alpha
Helix 31	AD4	E	1284	1304	Right-handed alpha
Helix 32	AD5	E	1317	1394	Right-handed alpha
Helix 33	AD6	F	1432	1453	Right-handed alpha
Helix 34	AD7	F	1530	1538	Right-handed alpha
Helix 35	AD8	F	1541	1562	Right-handed alpha
Helix 36	AD9	F	1563	1570	Right-handed alpha
Helix 37	AE1	F	1570	1589	Right-handed alpha
Helix 38	AE2	F	1605	1656	Right-handed alpha
Helix 39	AE3	F	1658	1680	Right-handed alpha
Helix 40	AE4	G	1715	1739	Right-handed alpha
Helix 41	AE5	G	1815	1823	Right-handed alpha
Helix 42	AE6	G	1826	1847	Right-handed alpha
Helix 43	AE7	G	1848	1855	Right-handed alpha
Helix 44	AE8	G	1855	1875	Right-handed alpha
Helix 45	AE9	G	1889	1965	Right-handed alpha
Helix 46	AF1	H	2003	2024	Right-handed alpha
Helix 47	AF2	H	2101	2109	Right-handed alpha
Helix 48	AF3	H	2112	2133	Right-handed alpha
Helix 49	AF4	H	2134	2141	Right-handed alpha
Helix 50	AF5	H	2141	2160	Right-handed alpha
Helix 51	AF6	H	2174	2227	Right-handed alpha
Helix 52	AF7	H	2229	2251	Right-handed alpha
Helix 53	AF8	I	2286	2310	Right-handed alpha
Helix 54	AF9	I	2386	2394	Right-handed alpha
Helix 55	AG1	I	2397	2418	Right-handed alpha
Helix 56	AG2	I	2419	2426	Right-handed alpha
Helix 57	AG3	I	2426	2446	Right-handed alpha
Helix 58	AG4	I	2460	2537	Right-handed alpha
Helix 59	AG5	J	2574	2595	Right-handed alpha
Helix 60	AG6	J	2672	2680	Right-handed alpha
Helix 61	AG7	J	2683	2704	Right-handed alpha
Helix 62	AG8	J	2705	2712	Right-handed alpha
Helix 63	AG9	J	2712	2731	Right-handed alpha
Helix 64	AH1	J	2746	2798	Right-handed alpha
Helix 65	AH2	J	2800	2822	Right-handed alpha
Helix 66	AH3	K	2857	2881	Right-handed alpha
Helix 67	AH4	K	2957	2965	Right-handed alpha
Helix 68	AH5	K	2968	2989	Right-handed alpha
Helix 69	AH6	K	2990	2997	Right-handed alpha
Helix 70	AH7	K	2997	3017	Right-handed alpha
Helix 71	AH8	K	3030	3107	Right-handed alpha

There are 33 sheets in PDB entry 8RRH. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	27	30	first strand
Strand 2	A	53	56	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	44	50	first strand
Strand 2	A	34	40	anti-parallel
Strand 3	A	62	68	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	72	81	first strand
Strand 2	A	87	98	anti-parallel
Strand 3	A	163	174	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	312	315	first strand
Strand 2	B	339	342	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	329	336	first strand
Strand 2	B	319	325	anti-parallel
Strand 3	B	348	354	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	358	367	first strand
Strand 2	B	373	384	anti-parallel
Strand 3	B	449	460	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	598	601	first strand
Strand 2	C	624	627	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	615	621	first strand
Strand 2	C	605	611	anti-parallel
Strand 3	C	633	639	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	643	652	first strand
Strand 2	C	658	669	anti-parallel
Strand 3	C	734	745	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	883	886	first strand
Strand 2	D	910	913	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	900	907	first strand
Strand 2	D	890	896	anti-parallel
Strand 3	D	919	925	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	929	938	first strand
Strand 2	D	944	955	anti-parallel
Strand 3	D	1020	1031	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	1169	1172	first strand
Strand 2	E	1195	1198	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	1186	1192	first strand
Strand 2	E	1176	1182	anti-parallel
Strand 3	E	1204	1210	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	1214	1223	first strand
Strand 2	E	1229	1240	anti-parallel
Strand 3	E	1305	1316	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	1454	1457	first strand
Strand 2	F	1481	1484	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	1471	1478	first strand
Strand 2	F	1461	1467	anti-parallel
Strand 3	F	1490	1496	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	1500	1509	first strand
Strand 2	F	1515	1526	anti-parallel
Strand 3	F	1591	1602	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	1740	1743	first strand
Strand 2	G	1766	1769	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	1757	1763	first strand
Strand 2	G	1747	1753	anti-parallel
Strand 3	G	1775	1781	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	1785	1794	first strand
Strand 2	G	1800	1811	anti-parallel
Strand 3	G	1876	1887	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	2025	2028	first strand
Strand 2	H	2052	2055	anti-parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	2042	2049	first strand
Strand 2	H	2032	2038	anti-parallel
Strand 3	H	2061	2067	anti-parallel

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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	2071	2080	first strand
Strand 2	H	2086	2097	anti-parallel
Strand 3	H	2162	2173	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	2311	2314	first strand
Strand 2	I	2337	2340	anti-parallel

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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	2328	2334	first strand
Strand 2	I	2318	2324	anti-parallel
Strand 3	I	2346	2352	anti-parallel

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There are 3 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	2356	2365	first strand
Strand 2	I	2371	2382	anti-parallel
Strand 3	I	2447	2458	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	2596	2599	first strand
Strand 2	J	2623	2626	anti-parallel

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There are 3 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	2613	2620	first strand
Strand 2	J	2603	2609	anti-parallel
Strand 3	J	2632	2638	anti-parallel

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There are 3 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	2642	2651	first strand
Strand 2	J	2657	2668	anti-parallel
Strand 3	J	2733	2744	anti-parallel

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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	2882	2885	first strand
Strand 2	K	2908	2911	anti-parallel

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There are 3 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	2899	2905	first strand
Strand 2	K	2889	2895	anti-parallel
Strand 3	K	2917	2923	anti-parallel

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There are 3 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	2927	2936	first strand
Strand 2	K	2942	2953	anti-parallel
Strand 3	K	3018	3029	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8RRH

Analysis of interatomic Contacts of Structural Units in PDB entry:
8RRH