Analysis of interatomic Contacts of Structural Units in PDB entry:
8RT1

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8RT1 entry

There are 9 chains in PDB entry 8RT1 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 47	MSE 514
B	THR 47	MSE 514
C	THR 47	MSE 514
D	LYS 70	MSE 514
E	LYS 70	MSE 514
F	THR 47	MSE 514
G	ALA 46	MSE 514
H	ALA 46	MSE 514
I	LYS 70	MSE 514

There are176 helices in PDB entry 8RT1. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	89	124	Right-handed alpha
Helix 2	AA2	A	125	136	Right-handed alpha
Helix 3	AA3	A	140	144	Right-handed 310
Helix 4	AA4	A	146	177	Right-handed alpha
Helix 5	AA5	A	184	211	Right-handed alpha
Helix 6	AA6	A	224	233	Right-handed alpha
Helix 7	AA7	A	248	256	Right-handed alpha
Helix 8	AA8	A	257	267	Right-handed alpha
Helix 9	AA9	A	279	289	Right-handed alpha
Helix 10	AB1	A	295	323	Right-handed alpha
Helix 11	AB2	A	323	335	Right-handed alpha
Helix 12	AB3	A	336	338	Right-handed 310
Helix 13	AB4	A	348	353	Right-handed alpha
Helix 14	AB5	A	354	356	Right-handed 310
Helix 15	AB6	A	358	362	Right-handed 310
Helix 16	AB7	A	425	439	Right-handed alpha
Helix 17	AB8	A	444	457	Right-handed alpha
Helix 18	AB9	A	470	484	Right-handed alpha
Helix 19	AC1	A	484	492	Right-handed alpha
Helix 20	AC2	A	495	509	Right-handed alpha
Helix 21	AC3	B	89	124	Right-handed alpha
Helix 22	AC4	B	125	136	Right-handed alpha
Helix 23	AC5	B	140	144	Right-handed 310
Helix 24	AC6	B	146	177	Right-handed alpha
Helix 25	AC7	B	184	211	Right-handed alpha
Helix 26	AC8	B	224	233	Right-handed alpha
Helix 27	AC9	B	248	256	Right-handed alpha
Helix 28	AD1	B	257	267	Right-handed alpha
Helix 29	AD2	B	279	289	Right-handed alpha
Helix 30	AD3	B	295	323	Right-handed alpha
Helix 31	AD4	B	323	335	Right-handed alpha
Helix 32	AD5	B	336	338	Right-handed 310
Helix 33	AD6	B	348	353	Right-handed alpha
Helix 34	AD7	B	354	356	Right-handed 310
Helix 35	AD8	B	358	362	Right-handed 310
Helix 36	AD9	B	425	441	Right-handed alpha
Helix 37	AE1	B	470	484	Right-handed alpha
Helix 38	AE2	B	484	492	Right-handed alpha
Helix 39	AE3	B	495	509	Right-handed alpha
Helix 40	AE4	C	89	124	Right-handed alpha
Helix 41	AE5	C	125	136	Right-handed alpha
Helix 42	AE6	C	140	144	Right-handed 310
Helix 43	AE7	C	146	178	Right-handed alpha
Helix 44	AE8	C	179	183	Right-handed 310
Helix 45	AE9	C	184	211	Right-handed alpha
Helix 46	AF1	C	224	233	Right-handed alpha
Helix 47	AF2	C	248	256	Right-handed alpha
Helix 48	AF3	C	257	267	Right-handed alpha
Helix 49	AF4	C	279	289	Right-handed alpha
Helix 50	AF5	C	295	323	Right-handed alpha
Helix 51	AF6	C	323	335	Right-handed alpha
Helix 52	AF7	C	336	338	Right-handed 310
Helix 53	AF8	C	348	353	Right-handed alpha
Helix 54	AF9	C	354	356	Right-handed 310
Helix 55	AG1	C	358	362	Right-handed 310
Helix 56	AG2	C	425	441	Right-handed alpha
Helix 57	AG3	C	470	484	Right-handed alpha
Helix 58	AG4	C	484	492	Right-handed alpha
Helix 59	AG5	C	495	509	Right-handed alpha
Helix 60	AG6	D	89	124	Right-handed alpha
Helix 61	AG7	D	125	136	Right-handed alpha
Helix 62	AG8	D	140	144	Right-handed 310
Helix 63	AG9	D	146	177	Right-handed alpha
Helix 64	AH1	D	184	211	Right-handed alpha
Helix 65	AH2	D	224	233	Right-handed alpha
Helix 66	AH3	D	248	256	Right-handed alpha
Helix 67	AH4	D	257	267	Right-handed alpha
Helix 68	AH5	D	279	289	Right-handed alpha
Helix 69	AH6	D	295	323	Right-handed alpha
Helix 70	AH7	D	323	335	Right-handed alpha
Helix 71	AH8	D	336	338	Right-handed 310
Helix 72	AH9	D	348	353	Right-handed alpha
Helix 73	AI1	D	354	356	Right-handed 310
Helix 74	AI2	D	358	362	Right-handed 310
Helix 75	AI3	D	425	440	Right-handed alpha
Helix 76	AI4	D	470	484	Right-handed alpha
Helix 77	AI5	D	484	492	Right-handed alpha
Helix 78	AI6	D	495	509	Right-handed alpha
Helix 79	AI7	E	89	124	Right-handed alpha
Helix 80	AI8	E	125	136	Right-handed alpha
Helix 81	AI9	E	140	144	Right-handed 310
Helix 82	AJ1	E	146	178	Right-handed alpha
Helix 83	AJ2	E	179	183	Right-handed 310
Helix 84	AJ3	E	184	211	Right-handed alpha
Helix 85	AJ4	E	224	233	Right-handed alpha
Helix 86	AJ5	E	248	256	Right-handed alpha
Helix 87	AJ6	E	257	267	Right-handed alpha
Helix 88	AJ7	E	279	289	Right-handed alpha
Helix 89	AJ8	E	295	323	Right-handed alpha
Helix 90	AJ9	E	323	335	Right-handed alpha
Helix 91	AK1	E	336	338	Right-handed 310
Helix 92	AK2	E	348	353	Right-handed alpha
Helix 93	AK3	E	354	356	Right-handed 310
Helix 94	AK4	E	358	362	Right-handed 310
Helix 95	AK5	E	425	437	Right-handed alpha
Helix 96	AK6	E	444	451	Right-handed alpha
Helix 97	AK7	E	470	484	Right-handed alpha
Helix 98	AK8	E	484	492	Right-handed alpha
Helix 99	AK9	E	495	509	Right-handed alpha
Helix 100	AL1	F	89	124	Right-handed alpha
Helix 101	AL2	F	125	136	Right-handed alpha
Helix 102	AL3	F	140	144	Right-handed 310
Helix 103	AL4	F	146	177	Right-handed alpha
Helix 104	AL5	F	184	211	Right-handed alpha
Helix 105	AL6	F	224	233	Right-handed alpha
Helix 106	AL7	F	248	256	Right-handed alpha
Helix 107	AL8	F	257	267	Right-handed alpha
Helix 108	AL9	F	279	289	Right-handed alpha
Helix 109	AM1	F	295	323	Right-handed alpha
Helix 110	AM2	F	323	335	Right-handed alpha
Helix 111	AM3	F	336	338	Right-handed 310
Helix 112	AM4	F	348	353	Right-handed alpha
Helix 113	AM5	F	354	356	Right-handed 310
Helix 114	AM6	F	358	362	Right-handed 310
Helix 115	AM7	F	425	440	Right-handed alpha
Helix 116	AM8	F	470	484	Right-handed alpha
Helix 117	AM9	F	484	492	Right-handed alpha
Helix 118	AN1	F	495	509	Right-handed alpha
Helix 119	AN2	G	89	124	Right-handed alpha
Helix 120	AN3	G	125	136	Right-handed alpha
Helix 121	AN4	G	140	144	Right-handed 310
Helix 122	AN5	G	146	177	Right-handed alpha
Helix 123	AN6	G	184	211	Right-handed alpha
Helix 124	AN7	G	224	233	Right-handed alpha
Helix 125	AN8	G	248	256	Right-handed alpha
Helix 126	AN9	G	257	267	Right-handed alpha
Helix 127	AO1	G	279	289	Right-handed alpha
Helix 128	AO2	G	295	323	Right-handed alpha
Helix 129	AO3	G	323	335	Right-handed alpha
Helix 130	AO4	G	336	338	Right-handed 310
Helix 131	AO5	G	348	353	Right-handed alpha
Helix 132	AO6	G	354	356	Right-handed 310
Helix 133	AO7	G	358	362	Right-handed 310
Helix 134	AO8	G	425	440	Right-handed alpha
Helix 135	AO9	G	470	484	Right-handed alpha
Helix 136	AP1	G	484	492	Right-handed alpha
Helix 137	AP2	G	495	509	Right-handed alpha
Helix 138	AP3	H	89	124	Right-handed alpha
Helix 139	AP4	H	125	136	Right-handed alpha
Helix 140	AP5	H	140	144	Right-handed 310
Helix 141	AP6	H	146	178	Right-handed alpha
Helix 142	AP7	H	179	183	Right-handed 310
Helix 143	AP8	H	184	211	Right-handed alpha
Helix 144	AP9	H	224	233	Right-handed alpha
Helix 145	AQ1	H	248	256	Right-handed alpha
Helix 146	AQ2	H	257	267	Right-handed alpha
Helix 147	AQ3	H	279	289	Right-handed alpha
Helix 148	AQ4	H	295	323	Right-handed alpha
Helix 149	AQ5	H	323	335	Right-handed alpha
Helix 150	AQ6	H	336	338	Right-handed 310
Helix 151	AQ7	H	348	353	Right-handed alpha
Helix 152	AQ8	H	354	356	Right-handed 310
Helix 153	AQ9	H	358	362	Right-handed 310
Helix 154	AR1	H	425	441	Right-handed alpha
Helix 155	AR2	H	470	484	Right-handed alpha
Helix 156	AR3	H	484	492	Right-handed alpha
Helix 157	AR4	H	495	509	Right-handed alpha
Helix 158	AR5	I	89	124	Right-handed alpha
Helix 159	AR6	I	125	136	Right-handed alpha
Helix 160	AR7	I	140	144	Right-handed 310
Helix 161	AR8	I	146	177	Right-handed alpha
Helix 162	AR9	I	184	211	Right-handed alpha
Helix 163	AS1	I	224	233	Right-handed alpha
Helix 164	AS2	I	248	256	Right-handed alpha
Helix 165	AS3	I	257	267	Right-handed alpha
Helix 166	AS4	I	279	289	Right-handed alpha
Helix 167	AS5	I	295	323	Right-handed alpha
Helix 168	AS6	I	323	335	Right-handed alpha
Helix 169	AS7	I	336	338	Right-handed 310
Helix 170	AS8	I	348	353	Right-handed alpha
Helix 171	AS9	I	354	356	Right-handed 310
Helix 172	AT1	I	358	362	Right-handed 310
Helix 173	AT2	I	425	439	Right-handed alpha
Helix 174	AT3	I	470	484	Right-handed alpha
Helix 175	AT4	I	484	492	Right-handed alpha
Helix 176	AT5	I	495	509	Right-handed alpha

There are 18 sheets in PDB entry 8RT1. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	217	223	first strand
Strand 2	A	72	79	parallel
Strand 3	A	511	513	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	402	407	first strand
Strand 2	A	391	397	anti-parallel
Strand 3	A	377	383	anti-parallel
Strand 4	A	365	369	anti-parallel
Strand 5	A	460	465	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	48	51	first strand
Strand 2	B	402	407	anti-parallel
Strand 3	B	391	397	anti-parallel
Strand 4	B	377	383	anti-parallel
Strand 5	B	365	369	anti-parallel
Strand 6	B	460	465	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	217	223	first strand
Strand 2	B	72	79	parallel
Strand 3	B	511	513	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	48	51	first strand
Strand 2	C	402	407	anti-parallel
Strand 3	C	391	397	anti-parallel
Strand 4	C	377	383	anti-parallel
Strand 5	C	365	369	anti-parallel
Strand 6	C	460	465	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	217	223	first strand
Strand 2	C	72	79	parallel
Strand 3	C	511	513	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	217	223	first strand
Strand 2	D	72	79	parallel
Strand 3	D	511	513	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	402	407	first strand
Strand 2	D	391	397	anti-parallel
Strand 3	D	377	383	anti-parallel
Strand 4	D	365	369	anti-parallel
Strand 5	D	460	465	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	217	223	first strand
Strand 2	E	72	79	parallel
Strand 3	E	511	513	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	402	407	first strand
Strand 2	E	391	397	anti-parallel
Strand 3	E	377	383	anti-parallel
Strand 4	E	365	369	anti-parallel
Strand 5	E	460	465	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	48	51	first strand
Strand 2	F	402	407	anti-parallel
Strand 3	F	391	397	anti-parallel
Strand 4	F	377	383	anti-parallel
Strand 5	F	365	369	anti-parallel
Strand 6	F	460	465	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	217	223	first strand
Strand 2	F	72	79	parallel
Strand 3	F	511	513	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	217	223	first strand
Strand 2	G	72	79	parallel
Strand 3	G	511	513	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	402	407	first strand
Strand 2	G	391	397	anti-parallel
Strand 3	G	377	383	anti-parallel
Strand 4	G	365	369	anti-parallel
Strand 5	G	460	465	anti-parallel

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There are 6 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	47	51	first strand
Strand 2	H	402	407	anti-parallel
Strand 3	H	391	397	anti-parallel
Strand 4	H	377	383	anti-parallel
Strand 5	H	365	369	anti-parallel
Strand 6	H	460	465	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	217	223	first strand
Strand 2	H	72	79	parallel
Strand 3	H	511	513	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	217	223	first strand
Strand 2	I	72	79	parallel
Strand 3	I	511	513	anti-parallel

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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	402	407	first strand
Strand 2	I	391	397	anti-parallel
Strand 3	I	377	383	anti-parallel
Strand 4	I	365	369	anti-parallel
Strand 5	I	460	465	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8RT1

Analysis of interatomic Contacts of Structural Units in PDB entry:
8RT1