Analysis of interatomic Contacts of Structural Units in PDB entry:
8RT8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8RT8 entry

There are 46 chains in PDB entry 8RT8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 135LYS 395
B
 LEU 21ASN 266
C
 CYS 17ARG 44
D
 LYS 135LYS 395
E
 LEU 21ASN 266
F
 CYS 17ARG 44
G
 LYS 135LYS 395
H
 LEU 21ASN 266
I
 CYS 17ARG 44
J
 LYS 135LYS 395
K
 LEU 21ASN 266
L
 CYS 17ARG 44
M
 LYS 135LYS 395
N
 LEU 21ASN 266
O
 CYS 17ARG 44
P
 LYS 135LYS 395
Q
 LEU 21ASN 266
R
 CYS 17ARG 44
S
 LYS 135LYS 395
T
 LEU 21ASN 266
U
 CYS 17ARG 44
V
 LYS 135LYS 395
W
 LEU 21ASN 266
X
 CYS 17ARG 44
Y
 LYS 135LYS 395
Z
 LEU 21ASN 266
a
 CYS 17ARG 44
b
 LYS 135LYS 395
c
 LEU 21ASN 266
d
 CYS 17ARG 44
e
 LYS 135LYS 395
f
 LEU 21ASN 266
g
 CYS 17ARG 44
h
 LYS 135LYS 395
i
 LEU 21ASN 266
j
 CYS 17ARG 44
k
 LYS 135LYS 395
l
 LEU 21ASN 266
m
 CYS 17ARG 44
n
 LYS 135LYS 395
o
 LEU 21ASN 266
p
 CYS 17ARG 44
u
 LYS 135GLY 153
v
 LEU 21PRO 128
y
 LYS 135GLY 153
z
 LEU 21PRO 128
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are104 helices in PDB entry 8RT8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
136 148Right-handed alpha
Helix 2
AA2
A
180 187Right-handed alpha
Helix 3
AA3
A
202 204Right-handed 310
Helix 4
AA4
A
305 329Right-handed alpha
Helix 5
AA5
A
350 359Right-handed alpha
Helix 6
AA6
B
127 151Right-handed alpha
Helix 7
AA7
D
136 148Right-handed alpha
Helix 8
AA8
D
180 186Right-handed alpha
Helix 9
AA9
D
306 329Right-handed alpha
Helix 10
AB1
D
350 359Right-handed alpha
Helix 11
AB2
E
127 151Right-handed alpha
Helix 12
AB3
E
166 169Right-handed 310
Helix 13
AB4
F
39 43Right-handed 310
Helix 14
AB5
G
136 148Right-handed alpha
Helix 15
AB6
G
180 187Right-handed alpha
Helix 16
AB7
G
305 329Right-handed alpha
Helix 17
AB8
G
350 359Right-handed alpha
Helix 18
AB9
H
128 150Right-handed alpha
Helix 19
AC1
H
166 169Right-handed 310
Helix 20
AC2
I
39 43Right-handed 310
Helix 21
AC3
J
136 148Right-handed alpha
Helix 22
AC4
J
182 187Right-handed alpha
Helix 23
AC5
J
306 329Right-handed alpha
Helix 24
AC6
J
350 358Right-handed alpha
Helix 25
AC7
K
127 151Right-handed alpha
Helix 26
AC8
K
166 169Right-handed 310
Helix 27
AC9
L
39 43Right-handed 310
Helix 28
AD1
M
136 148Right-handed alpha
Helix 29
AD2
M
182 187Right-handed alpha
Helix 30
AD3
M
305 329Right-handed alpha
Helix 31
AD4
M
350 359Right-handed alpha
Helix 32
AD5
N
127 151Right-handed alpha
Helix 33
AD6
N
166 169Right-handed 310
Helix 34
AD7
O
39 43Right-handed 310
Helix 35
AD8
P
136 148Right-handed alpha
Helix 36
AD9
P
180 187Right-handed alpha
Helix 37
AE1
P
305 330Right-handed alpha
Helix 38
AE2
P
350 358Right-handed alpha
Helix 39
AE3
Q
127 151Right-handed alpha
Helix 40
AE4
Q
166 169Right-handed 310
Helix 41
AE5
R
39 43Right-handed 310
Helix 42
AE6
S
136 148Right-handed alpha
Helix 43
AE7
S
180 186Right-handed alpha
Helix 44
AE8
S
305 329Right-handed alpha
Helix 45
AE9
S
350 359Right-handed alpha
Helix 46
AF1
T
127 151Right-handed alpha
Helix 47
AF2
T
166 169Right-handed 310
Helix 48
AF3
U
39 43Right-handed 310
Helix 49
AF4
V
136 148Right-handed alpha
Helix 50
AF5
V
180 186Right-handed alpha
Helix 51
AF6
V
202 204Right-handed 310
Helix 52
AF7
V
305 329Right-handed alpha
Helix 53
AF8
V
350 359Right-handed alpha
Helix 54
AF9
W
71 75Right-handed 310
Helix 55
AG1
W
128 150Right-handed alpha
Helix 56
AG2
W
166 169Right-handed 310
Helix 57
AG3
Y
136 148Right-handed alpha
Helix 58
AG4
Y
180 187Right-handed alpha
Helix 59
AG5
Y
202 204Right-handed 310
Helix 60
AG6
Y
305 329Right-handed alpha
Helix 61
AG7
Y
350 359Right-handed alpha
Helix 62
AG8
Z
127 150Right-handed alpha
Helix 63
AG9
Z
166 169Right-handed 310
Helix 64
AH1
b
136 148Right-handed alpha
Helix 65
AH2
b
180 187Right-handed alpha
Helix 66
AH3
b
306 329Right-handed alpha
Helix 67
AH4
b
350 359Right-handed alpha
Helix 68
AH5
c
127 151Right-handed alpha
Helix 69
AH6
c
166 169Right-handed 310
Helix 70
AH7
d
39 43Right-handed 310
Helix 71
AH8
e
136 148Right-handed alpha
Helix 72
AH9
e
180 186Right-handed alpha
Helix 73
AI1
e
202 204Right-handed 310
Helix 74
AI2
e
305 329Right-handed alpha
Helix 75
AI3
e
350 359Right-handed alpha
Helix 76
AI4
f
127 135Right-handed alpha
Helix 77
AI5
f
136 151Right-handed alpha
Helix 78
AI6
f
166 169Right-handed 310
Helix 79
AI7
g
39 43Right-handed 310
Helix 80
AI8
h
136 148Right-handed alpha
Helix 81
AI9
h
182 187Right-handed alpha
Helix 82
AJ1
h
305 330Right-handed alpha
Helix 83
AJ2
h
350 359Right-handed alpha
Helix 84
AJ3
i
127 151Right-handed alpha
Helix 85
AJ4
i
166 169Right-handed 310
Helix 86
AJ5
j
39 43Right-handed 310
Helix 87
AJ6
k
136 148Right-handed alpha
Helix 88
AJ7
k
180 187Right-handed alpha
Helix 89
AJ8
k
202 204Right-handed 310
Helix 90
AJ9
k
305 329Right-handed alpha
Helix 91
AK1
k
350 359Right-handed alpha
Helix 92
AK2
l
127 151Right-handed alpha
Helix 93
AK3
l
166 169Right-handed 310
Helix 94
AK4
m
39 43Right-handed 310
Helix 95
AK5
n
136 148Right-handed alpha
Helix 96
AK6
n
180 186Right-handed alpha
Helix 97
AK7
n
305 329Right-handed alpha
Helix 98
AK8
n
350 359Right-handed alpha
Helix 99
AK9
o
127 150Right-handed alpha
Helix 100
AL1
o
166 169Right-handed 310
Helix 101
AL2
u
136 148Right-handed alpha
Helix 102
AL3
v
71 75Right-handed 310
Helix 103
AL4
y
136 148Right-handed alpha
Helix 104
AL5
z
71 73Right-handed 310
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