Analysis of interatomic Contacts of Structural Units in PDB entry:
8RTB

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8RTB entry

There are 9 chains in PDB entry 8RTB (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
C	MET 1	ARG 104
A	MET 1	ASP 822
B	PRO 15	SER 821
E	GLN 13	SER 62
D	GLN 5	SER 62
F	ARG 22	SER 62
G	ARG 22	SER 62
H	GLN 21	VAL 69
J	ALA 30	LEU 82

There are 70 helices in PDB entry 8RTB. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	C	28	45	Right-handed alpha
Helix 2	AA2	C	47	51	Right-handed 310
Helix 3	AA3	C	52	67	Right-handed alpha
Helix 4	AA4	C	69	81	Right-handed alpha
Helix 5	AA5	C	86	91	Right-handed alpha
Helix 6	AA6	A	4	12	Right-handed alpha
Helix 7	AA7	A	15	20	Right-handed 310
Helix 8	AA8	A	53	72	Right-handed alpha
Helix 9	AA9	A	97	110	Right-handed alpha
Helix 10	AB1	A	132	140	Right-handed alpha
Helix 11	AB2	A	145	171	Right-handed alpha
Helix 12	AB3	A	172	175	Right-handed 310
Helix 13	AB4	A	190	202	Right-handed alpha
Helix 14	AB5	A	213	218	Right-handed alpha
Helix 15	AB6	A	258	266	Right-handed 310
Helix 16	AB7	A	280	297	Right-handed alpha
Helix 17	AB8	A	305	318	Right-handed alpha
Helix 18	AB9	A	336	354	Right-handed alpha
Helix 19	AC1	A	364	370	Right-handed alpha
Helix 20	AC2	A	387	395	Right-handed alpha
Helix 21	AC3	A	456	468	Right-handed alpha
Helix 22	AC4	A	469	472	Right-handed 310
Helix 23	AC5	A	484	491	Right-handed alpha
Helix 24	AC6	A	507	511	Right-handed 310
Helix 25	AC7	A	514	529	Right-handed alpha
Helix 26	AC8	A	620	625	Right-handed 310
Helix 27	AC9	A	628	642	Right-handed alpha
Helix 28	AD1	A	656	661	Right-handed alpha
Helix 29	AD2	A	665	677	Right-handed alpha
Helix 30	AD3	A	678	680	Right-handed 310
Helix 31	AD4	A	689	695	Right-handed alpha
Helix 32	AD5	A	696	705	Right-handed alpha
Helix 33	AD6	A	718	725	Right-handed alpha
Helix 34	AD7	A	729	738	Right-handed alpha
Helix 35	AD8	A	777	785	Right-handed alpha
Helix 36	AD9	A	787	801	Right-handed alpha
Helix 37	AE1	A	804	820	Right-handed alpha
Helix 38	AE2	B	53	71	Right-handed alpha
Helix 39	AE3	B	97	110	Right-handed alpha
Helix 40	AE4	B	148	171	Right-handed alpha
Helix 41	AE5	B	191	202	Right-handed alpha
Helix 42	AE6	B	213	218	Right-handed alpha
Helix 43	AE7	B	260	265	Right-handed 310
Helix 44	AE8	B	280	297	Right-handed alpha
Helix 45	AE9	B	305	320	Right-handed alpha
Helix 46	AF1	B	336	353	Right-handed alpha
Helix 47	AF2	B	364	371	Right-handed alpha
Helix 48	AF3	B	387	395	Right-handed alpha
Helix 49	AF4	B	456	468	Right-handed alpha
Helix 50	AF5	B	469	472	Right-handed 310
Helix 51	AF6	B	484	491	Right-handed alpha
Helix 52	AF7	B	628	643	Right-handed alpha
Helix 53	AF8	B	656	661	Right-handed alpha
Helix 54	AF9	B	662	677	Right-handed alpha
Helix 55	AG1	B	689	695	Right-handed alpha
Helix 56	AG2	B	696	705	Right-handed alpha
Helix 57	AG3	B	718	725	Right-handed alpha
Helix 58	AG4	B	729	739	Right-handed alpha
Helix 59	AG5	B	776	785	Right-handed alpha
Helix 60	AG6	B	787	802	Right-handed alpha
Helix 61	AG7	B	804	821	Right-handed alpha
Helix 62	AG8	E	16	25	Right-handed alpha
Helix 63	AG9	E	27	62	Right-handed alpha
Helix 64	AH1	D	13	60	Right-handed alpha
Helix 65	AH2	F	23	61	Right-handed alpha
Helix 66	AH3	G	23	61	Right-handed alpha
Helix 67	AH4	H	43	69	Right-handed alpha
Helix 68	AH5	J	31	49	Right-handed alpha
Helix 69	AH6	J	49	54	Right-handed alpha
Helix 70	AH7	J	60	82	Right-handed alpha

There are 19 sheets in PDB entry 8RTB. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	22	23	first strand
Strand 2	C	26	27	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	93	94	first strand
Strand 2	A	222	225	anti-parallel
Strand 3	A	232	235	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	25	27	first strand
Strand 2	A	30	31	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	124	127	first strand
Strand 2	A	38	43	anti-parallel
Strand 3	A	177	178	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	85	86	first strand
Strand 2	A	117	118	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	182	183	first strand
Strand 2	A	188	189	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	242	245	first strand
Strand 2	A	331	334	anti-parallel
Strand 3	A	270	271	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	248	250	first strand
Strand 2	A	357	358	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	276	278	first strand
Strand 2	A	324	326	anti-parallel
Strand 3	A	384	386	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	415	417	first strand
Strand 2	A	425	427	anti-parallel

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There are 9 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	495	496	first strand
Strand 2	A	614	618	parallel
Strand 3	A	474	479	parallel
Strand 4	A	649	652	parallel
Strand 5	A	683	685	parallel
Strand 6	A	447	450	parallel
Strand 7	A	708	711	parallel
Strand 8	A	746	750	anti-parallel
Strand 9	A	755	757	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	767	768	first strand
Strand 2	A	771	772	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	22	27	first strand
Strand 2	B	30	33	anti-parallel

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There are 8 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	177	178	first strand
Strand 2	B	38	44	anti-parallel
Strand 3	B	117	127	anti-parallel
Strand 4	B	78	86	anti-parallel
Strand 5	B	271	275	anti-parallel
Strand 6	B	328	334	anti-parallel
Strand 7	B	242	247	anti-parallel
Strand 8	B	359	360	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	183	184	first strand
Strand 2	B	187	188	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	277	278	first strand
Strand 2	B	324	325	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	415	417	first strand
Strand 2	B	425	427	anti-parallel

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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	684	687	first strand
Strand 2	B	447	450	parallel
Strand 3	B	708	711	parallel
Strand 4	B	747	750	anti-parallel
Strand 5	B	753	756	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	615	618	first strand
Strand 2	B	476	479	parallel
Strand 3	B	651	652	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8RTB

Analysis of interatomic Contacts of Structural Units in PDB entry:
8RTB