Analysis of interatomic Contacts of Structural Units in PDB entry:
8RTF

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8RTF entry

There are 3 chains in PDB entry 8RTF (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 2	GLU 500
B	SER 2	ASN 501
C	SER 2	ASP 451

There are144 helices in PDB entry 8RTF. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	2	9	Right-handed alpha
Helix 2	AA2	A	34	44	Right-handed alpha
Helix 3	AA3	A	57	76	Right-handed alpha
Helix 4	AA4	A	113	117	Right-handed 310
Helix 5	AA5	A	131	136	Right-handed alpha
Helix 6	AA6	A	191	205	Right-handed alpha
Helix 7	AA7	A	216	228	Right-handed alpha
Helix 8	AA8	A	242	248	Right-handed alpha
Helix 9	AA9	A	248	256	Right-handed alpha
Helix 10	AB1	A	262	270	Right-handed alpha
Helix 11	AB2	A	271	290	Right-handed alpha
Helix 12	AB3	A	300	305	Right-handed 310
Helix 13	AB4	A	310	323	Right-handed alpha
Helix 14	AB5	A	339	358	Right-handed alpha
Helix 15	AB6	A	361	370	Right-handed alpha
Helix 16	AB7	A	376	393	Right-handed alpha
Helix 17	AB8	A	404	414	Right-handed alpha
Helix 18	AB9	A	425	433	Right-handed alpha
Helix 19	AC1	A	454	468	Right-handed alpha
Helix 20	AC2	B	3	9	Right-handed alpha
Helix 21	AC3	B	34	44	Right-handed alpha
Helix 22	AC4	B	57	76	Right-handed alpha
Helix 23	AC5	B	191	205	Right-handed alpha
Helix 24	AC6	B	216	228	Right-handed alpha
Helix 25	AC7	B	229	232	Right-handed 310
Helix 26	AC8	B	242	248	Right-handed alpha
Helix 27	AC9	B	248	256	Right-handed alpha
Helix 28	AD1	B	262	270	Right-handed alpha
Helix 29	AD2	B	271	290	Right-handed alpha
Helix 30	AD3	B	300	305	Right-handed 310
Helix 31	AD4	B	310	324	Right-handed alpha
Helix 32	AD5	B	331	336	Right-handed alpha
Helix 33	AD6	B	339	358	Right-handed alpha
Helix 34	AD7	B	361	370	Right-handed alpha
Helix 35	AD8	B	376	393	Right-handed alpha
Helix 36	AD9	B	404	413	Right-handed alpha
Helix 37	AE1	B	425	432	Right-handed alpha
Helix 38	AE2	B	433	435	Right-handed 310
Helix 39	AE3	B	454	468	Right-handed alpha
Helix 40	AE4	C	3	9	Right-handed alpha
Helix 41	AE5	C	34	45	Right-handed alpha
Helix 42	AE6	C	57	76	Right-handed alpha
Helix 43	AE7	C	131	136	Right-handed alpha
Helix 44	AE8	C	191	205	Right-handed alpha
Helix 45	AE9	C	216	227	Right-handed alpha
Helix 46	AF1	C	228	232	Right-handed 310
Helix 47	AF2	C	242	248	Right-handed alpha
Helix 48	AF3	C	248	256	Right-handed alpha
Helix 49	AF4	C	262	270	Right-handed alpha
Helix 50	AF5	C	271	290	Right-handed alpha
Helix 51	AF6	C	300	305	Right-handed 310
Helix 52	AF7	C	310	324	Right-handed alpha
Helix 53	AF8	C	331	336	Right-handed alpha
Helix 54	AF9	C	339	358	Right-handed alpha
Helix 55	AG1	C	361	371	Right-handed alpha
Helix 56	AG2	C	376	393	Right-handed alpha
Helix 57	AG3	C	404	413	Right-handed alpha
Helix 58	AG4	C	425	432	Right-handed alpha
Helix 59	AG5	C	433	435	Right-handed 310
Helix 60	AG6	C	455	468	Right-handed alpha
Helix 61	AG7	D	3	9	Right-handed alpha
Helix 62	AG8	D	34	45	Right-handed alpha
Helix 63	AG9	D	57	76	Right-handed alpha
Helix 64	AH1	D	95	99	Right-handed 310
Helix 65	AH2	D	113	118	Right-handed 310
Helix 66	AH3	D	131	136	Right-handed alpha
Helix 67	AH4	D	191	205	Right-handed alpha
Helix 68	AH5	D	216	227	Right-handed alpha
Helix 69	AH6	D	242	248	Right-handed alpha
Helix 70	AH7	D	248	256	Right-handed alpha
Helix 71	AH8	D	262	270	Right-handed alpha
Helix 72	AH9	D	271	290	Right-handed alpha
Helix 73	AI1	D	300	305	Right-handed 310
Helix 74	AI2	D	310	324	Right-handed alpha
Helix 75	AI3	D	331	336	Right-handed alpha
Helix 76	AI4	D	339	358	Right-handed alpha
Helix 77	AI5	D	361	371	Right-handed alpha
Helix 78	AI6	D	376	393	Right-handed alpha
Helix 79	AI7	D	404	413	Right-handed alpha
Helix 80	AI8	D	425	432	Right-handed alpha
Helix 81	AI9	D	433	435	Right-handed 310
Helix 82	AJ1	D	454	468	Right-handed alpha
Helix 83	AJ2	E	3	9	Right-handed alpha
Helix 84	AJ3	E	34	44	Right-handed alpha
Helix 85	AJ4	E	57	76	Right-handed alpha
Helix 86	AJ5	E	191	205	Right-handed alpha
Helix 87	AJ6	E	216	227	Right-handed alpha
Helix 88	AJ7	E	228	232	Right-handed 310
Helix 89	AJ8	E	242	248	Right-handed alpha
Helix 90	AJ9	E	248	256	Right-handed alpha
Helix 91	AK1	E	262	268	Right-handed alpha
Helix 92	AK2	E	274	290	Right-handed alpha
Helix 93	AK3	E	300	305	Right-handed 310
Helix 94	AK4	E	310	324	Right-handed alpha
Helix 95	AK5	E	331	336	Right-handed alpha
Helix 96	AK6	E	339	358	Right-handed alpha
Helix 97	AK7	E	361	370	Right-handed alpha
Helix 98	AK8	E	376	393	Right-handed alpha
Helix 99	AK9	E	404	413	Right-handed alpha
Helix 100	AL1	E	425	432	Right-handed alpha
Helix 101	AL2	E	433	435	Right-handed 310
Helix 102	AL3	E	455	468	Right-handed alpha
Helix 103	AL4	F	3	9	Right-handed alpha
Helix 104	AL5	F	34	44	Right-handed alpha
Helix 105	AL6	F	57	76	Right-handed alpha
Helix 106	AL7	F	191	205	Right-handed alpha
Helix 107	AL8	F	216	227	Right-handed alpha
Helix 108	AL9	F	228	232	Right-handed 310
Helix 109	AM1	F	242	248	Right-handed alpha
Helix 110	AM2	F	248	256	Right-handed alpha
Helix 111	AM3	F	262	267	Right-handed alpha
Helix 112	AM4	F	271	290	Right-handed alpha
Helix 113	AM5	F	300	305	Right-handed 310
Helix 114	AM6	F	310	324	Right-handed alpha
Helix 115	AM7	F	331	336	Right-handed alpha
Helix 116	AM8	F	339	358	Right-handed alpha
Helix 117	AM9	F	361	370	Right-handed alpha
Helix 118	AN1	F	378	393	Right-handed alpha
Helix 119	AN2	F	404	413	Right-handed alpha
Helix 120	AN3	F	425	432	Right-handed alpha
Helix 121	AN4	F	433	435	Right-handed 310
Helix 122	AN5	F	455	468	Right-handed alpha
Helix 123	AN6	G	68	71	Right-handed 310
Helix 124	AN7	G	93	97	Right-handed 310
Helix 125	AN8	G	113	117	Right-handed 310
Helix 126	AN9	H	29	32	Right-handed 310
Helix 127	AO1	H	36	38	Right-handed 310
Helix 128	AO2	H	68	71	Right-handed 310
Helix 129	AO3	H	93	97	Right-handed 310
Helix 130	AO4	H	113	117	Right-handed 310
Helix 131	AO5	I	34	38	Right-handed 310
Helix 132	AO6	I	68	71	Right-handed 310
Helix 133	AO7	I	93	97	Right-handed 310
Helix 134	AO8	I	113	117	Right-handed 310
Helix 135	AO9	J	34	38	Right-handed 310
Helix 136	AP1	J	68	71	Right-handed 310
Helix 137	AP2	J	93	97	Right-handed 310
Helix 138	AP3	J	113	117	Right-handed 310
Helix 139	AP4	K	68	71	Right-handed 310
Helix 140	AP5	K	93	97	Right-handed 310
Helix 141	AP6	K	113	117	Right-handed 310
Helix 142	AP7	L	68	71	Right-handed 310
Helix 143	AP8	L	93	97	Right-handed 310
Helix 144	AP9	L	113	117	Right-handed 310

There are 36 sheets in PDB entry 8RTF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	23	27	first strand
Strand 2	A	48	52	parallel
Strand 3	A	80	84	parallel
Strand 4	A	208	211	parallel
Strand 5	A	235	240	parallel
Strand 6	A	258	261	parallel
Strand 7	A	293	295	parallel
Strand 8	A	327	330	parallel
Strand 9	A	23	27	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	99	102	first strand
Strand 2	A	170	173	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	124	126	first strand
Strand 2	A	107	111	parallel
Strand 3	A	161	166	anti-parallel
Strand 4	A	149	155	anti-parallel
Strand 5	A	141	144	anti-parallel

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There are 10 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	438	442	first strand
Strand 2	A	419	423	parallel
Strand 3	A	397	400	parallel
Strand 4	A	476	481	parallel
Strand 5	A	492	497	anti-parallel
Strand 6	C	492	497	anti-parallel
Strand 7	C	476	481	anti-parallel
Strand 8	C	396	400	parallel
Strand 9	C	419	423	parallel
Strand 10	C	438	442	parallel

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There are 9 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	23	27	first strand
Strand 2	B	46	52	parallel
Strand 3	B	80	84	parallel
Strand 4	B	208	211	parallel
Strand 5	B	235	240	parallel
Strand 6	B	258	261	parallel
Strand 7	B	293	295	parallel
Strand 8	B	327	330	parallel
Strand 9	B	23	27	parallel

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There are 10 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	438	442	first strand
Strand 2	B	419	423	parallel
Strand 3	B	397	399	parallel
Strand 4	B	476	481	parallel
Strand 5	B	492	497	anti-parallel
Strand 6	D	492	497	anti-parallel
Strand 7	D	476	481	anti-parallel
Strand 8	D	396	400	parallel
Strand 9	D	419	423	parallel
Strand 10	D	438	442	parallel

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There are 9 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	23	27	first strand
Strand 2	C	48	52	parallel
Strand 3	C	80	84	parallel
Strand 4	C	208	211	parallel
Strand 5	C	235	240	parallel
Strand 6	C	258	261	parallel
Strand 7	C	293	295	parallel
Strand 8	C	327	330	parallel
Strand 9	C	23	27	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	90	91	first strand
Strand 2	C	177	178	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	100	102	first strand
Strand 2	C	170	172	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	124	126	first strand
Strand 2	C	107	111	parallel
Strand 3	C	161	166	anti-parallel
Strand 4	C	149	153	anti-parallel
Strand 5	C	141	144	anti-parallel

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There are 9 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	23	27	first strand
Strand 2	D	48	52	parallel
Strand 3	D	80	84	parallel
Strand 4	D	208	211	parallel
Strand 5	D	235	240	parallel
Strand 6	D	258	261	parallel
Strand 7	D	293	295	parallel
Strand 8	D	327	330	parallel
Strand 9	D	23	27	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	100	102	first strand
Strand 2	D	170	172	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	124	126	first strand
Strand 2	D	107	111	parallel
Strand 3	D	161	166	anti-parallel
Strand 4	D	150	158	anti-parallel
Strand 5	D	141	143	anti-parallel

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There are 9 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	23	27	first strand
Strand 2	E	46	52	parallel
Strand 3	E	80	84	parallel
Strand 4	E	208	211	parallel
Strand 5	E	235	240	parallel
Strand 6	E	258	261	parallel
Strand 7	E	293	295	parallel
Strand 8	E	327	330	parallel
Strand 9	E	23	27	parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	438	442	first strand
Strand 2	E	419	423	parallel
Strand 3	E	397	399	parallel
Strand 4	E	476	480	parallel
Strand 5	E	493	497	anti-parallel

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There are 9 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	23	27	first strand
Strand 2	F	46	52	parallel
Strand 3	F	80	84	parallel
Strand 4	F	208	211	parallel
Strand 5	F	235	240	parallel
Strand 6	F	258	261	parallel
Strand 7	F	293	295	parallel
Strand 8	F	327	330	parallel
Strand 9	F	23	27	parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	438	442	first strand
Strand 2	F	419	423	parallel
Strand 3	F	397	399	parallel
Strand 4	F	476	480	parallel
Strand 5	F	494	497	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	2	7	first strand
Strand 2	G	18	26	anti-parallel
Strand 3	G	84	89	anti-parallel
Strand 4	G	74	79	anti-parallel

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There are 6 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	10	13	first strand
Strand 2	G	124	129	parallel
Strand 3	G	98	104	anti-parallel
Strand 4	G	40	45	anti-parallel
Strand 5	G	51	57	anti-parallel
Strand 6	G	64	66	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	10	13	first strand
Strand 2	G	124	129	parallel
Strand 3	G	98	104	anti-parallel
Strand 4	G	119	120	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	3	7	first strand
Strand 2	H	16	25	anti-parallel
Strand 3	H	84	92	anti-parallel
Strand 4	H	74	79	anti-parallel

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There are 6 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	10	13	first strand
Strand 2	H	124	129	parallel
Strand 3	H	98	104	anti-parallel
Strand 4	H	40	45	anti-parallel
Strand 5	H	52	57	anti-parallel
Strand 6	H	64	66	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	10	13	first strand
Strand 2	H	124	129	parallel
Strand 3	H	98	104	anti-parallel
Strand 4	H	119	120	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	27	28	first strand
Strand 2	H	33	34	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	4	7	first strand
Strand 2	I	19	24	anti-parallel
Strand 3	I	84	89	anti-parallel
Strand 4	I	74	79	anti-parallel

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There are 6 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	10	13	first strand
Strand 2	I	124	129	parallel
Strand 3	I	98	104	anti-parallel
Strand 4	I	40	45	anti-parallel
Strand 5	I	52	57	anti-parallel
Strand 6	I	64	66	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	10	13	first strand
Strand 2	I	124	129	parallel
Strand 3	I	98	104	anti-parallel
Strand 4	I	119	120	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	3	7	first strand
Strand 2	J	18	25	anti-parallel
Strand 3	J	84	89	anti-parallel
Strand 4	J	74	79	anti-parallel

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There are 6 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	10	13	first strand
Strand 2	J	124	129	parallel
Strand 3	J	98	105	anti-parallel
Strand 4	J	39	45	anti-parallel
Strand 5	J	51	57	anti-parallel
Strand 6	J	64	66	anti-parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	10	13	first strand
Strand 2	J	124	129	parallel
Strand 3	J	98	105	anti-parallel
Strand 4	J	119	120	anti-parallel

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There are 4 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	3	7	first strand
Strand 2	K	19	25	anti-parallel
Strand 3	K	84	89	anti-parallel
Strand 4	K	74	79	anti-parallel

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There are 6 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	11	13	first strand
Strand 2	K	124	129	parallel
Strand 3	K	98	105	anti-parallel
Strand 4	K	39	45	anti-parallel
Strand 5	K	51	57	anti-parallel
Strand 6	K	64	66	anti-parallel

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There are 4 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	11	13	first strand
Strand 2	K	124	129	parallel
Strand 3	K	98	105	anti-parallel
Strand 4	K	119	120	anti-parallel

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There are 4 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	3	5	first strand
Strand 2	L	17	25	anti-parallel
Strand 3	L	84	90	anti-parallel
Strand 4	L	74	79	anti-parallel

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There are 6 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	10	13	first strand
Strand 2	L	124	129	parallel
Strand 3	L	98	104	anti-parallel
Strand 4	L	40	45	anti-parallel
Strand 5	L	52	57	anti-parallel
Strand 6	L	64	66	anti-parallel

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There are 4 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	10	13	first strand
Strand 2	L	124	129	parallel
Strand 3	L	98	104	anti-parallel
Strand 4	L	119	120	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8RTF

Analysis of interatomic Contacts of Structural Units in PDB entry:
8RTF