Analysis of interatomic Contacts of Structural Units in PDB entry:
8RU1


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8RU1 entry

There are 4 chains in PDB entry 8RU1 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 437PRO 540
B
 ASP 438PHE 539
C
 ASP 438PHE 539
D
 ASP 438PHE 539
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 25 helices in PDB entry 8RU1. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
438 453Right-handed alpha
Helix 2
AA2
A
456 460Right-handed 310
Helix 3
AA3
A
464 468Right-handed 310
Helix 4
AA4
A
470 475Right-handed alpha
Helix 5
AA5
A
480 490Right-handed alpha
Helix 6
AA6
A
495 515Right-handed alpha
Helix 7
AA7
A
518 539Right-handed alpha
Helix 8
AA8
B
439 453Right-handed alpha
Helix 9
AA9
B
456 460Right-handed 310
Helix 10
AB1
B
470 475Right-handed alpha
Helix 11
AB2
B
480 490Right-handed alpha
Helix 12
AB3
B
495 515Right-handed alpha
Helix 13
AB4
B
518 539Right-handed alpha
Helix 14
AB5
C
439 453Right-handed alpha
Helix 15
AB6
C
456 460Right-handed 310
Helix 16
AB7
C
470 475Right-handed alpha
Helix 17
AB8
C
480 490Right-handed alpha
Helix 18
AB9
C
495 515Right-handed alpha
Helix 19
AC1
C
518 539Right-handed alpha
Helix 20
AC2
D
439 453Right-handed alpha
Helix 21
AC3
D
456 460Right-handed 310
Helix 22
AC4
D
470 475Right-handed alpha
Helix 23
AC5
D
480 490Right-handed alpha
Helix 24
AC6
D
495 515Right-handed alpha
Helix 25
AC7
D
518 539Right-handed alpha
Back to top of page
There are no sheets in PDB entry 8RU1
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il