Analysis of interatomic Contacts of Structural Units in PDB entry:
8RU2

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8RU2 entry

There are 8 chains in PDB entry 8RU2 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	ALA 6	GLU 72
B	GLY 74	PHE 375
C	ALA 6	GLU 72
C	GLY 74	CYS 374
D	ALA 6	GLU 72
D	GLY 74	PHE 375
E	PRO 747	ALA 1148
F	PRO 747	ALA 1148

There are 91 helices in PDB entry 8RU2. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	55	61	Right-handed alpha
Helix 2	AA2	B	79	91	Right-handed alpha
Helix 3	AA3	B	112	127	Right-handed alpha
Helix 4	AA4	B	137	146	Right-handed alpha
Helix 5	AA5	B	172	175	Right-handed 310
Helix 6	AA6	B	181	197	Right-handed alpha
Helix 7	AA7	B	204	216	Right-handed alpha
Helix 8	AA8	B	223	233	Right-handed alpha
Helix 9	AA9	B	252	260	Right-handed alpha
Helix 10	AB1	B	261	262	Right-handed 310
Helix 11	AB2	B	263	267	Right-handed 310
Helix 12	AB3	B	273	284	Right-handed alpha
Helix 13	AB4	B	287	289	Right-handed 310
Helix 14	AB5	B	290	295	Right-handed alpha
Helix 15	AB6	B	302	306	Right-handed 310
Helix 16	AB7	B	308	319	Right-handed alpha
Helix 17	AB8	B	337	349	Right-handed alpha
Helix 18	AB9	B	350	355	Right-handed 310
Helix 19	AC1	B	358	364	Right-handed alpha
Helix 20	AC2	B	366	372	Right-handed 310
Helix 21	AC3	C	55	61	Right-handed alpha
Helix 22	AC4	C	79	92	Right-handed alpha
Helix 23	AC5	C	112	126	Right-handed alpha
Helix 24	AC6	C	137	143	Right-handed alpha
Helix 25	AC7	C	171	175	Right-handed 310
Helix 26	AC8	C	181	193	Right-handed alpha
Helix 27	AC9	C	202	217	Right-handed alpha
Helix 28	AD1	C	222	233	Right-handed alpha
Helix 29	AD2	C	252	257	Right-handed alpha
Helix 30	AD3	C	258	262	Right-handed 310
Helix 31	AD4	C	263	268	Right-handed 310
Helix 32	AD5	C	273	284	Right-handed alpha
Helix 33	AD6	C	289	295	Right-handed alpha
Helix 34	AD7	C	301	306	Right-handed 310
Helix 35	AD8	C	308	321	Right-handed alpha
Helix 36	AD9	C	334	336	Right-handed 310
Helix 37	AE1	C	337	349	Right-handed alpha
Helix 38	AE2	C	350	356	Right-handed 310
Helix 39	AE3	C	359	366	Right-handed alpha
Helix 40	AE4	C	368	374	Right-handed alpha
Helix 41	AE5	D	55	61	Right-handed alpha
Helix 42	AE6	D	80	92	Right-handed alpha
Helix 43	AE7	D	112	126	Right-handed alpha
Helix 44	AE8	D	138	145	Right-handed alpha
Helix 45	AE9	D	181	194	Right-handed alpha
Helix 46	AF1	D	205	217	Right-handed alpha
Helix 47	AF2	D	225	233	Right-handed alpha
Helix 48	AF3	D	252	257	Right-handed alpha
Helix 49	AF4	D	258	262	Right-handed 310
Helix 50	AF5	D	263	267	Right-handed 310
Helix 51	AF6	D	273	284	Right-handed alpha
Helix 52	AF7	D	289	295	Right-handed alpha
Helix 53	AF8	D	301	305	Right-handed 310
Helix 54	AF9	D	308	321	Right-handed alpha
Helix 55	AG1	D	337	349	Right-handed alpha
Helix 56	AG2	D	350	354	Right-handed 310
Helix 57	AG3	D	359	366	Right-handed alpha
Helix 58	AG4	D	368	373	Right-handed alpha
Helix 59	AG5	E	791	802	Right-handed alpha
Helix 60	AG6	E	836	850	Right-handed alpha
Helix 61	AG7	E	853	864	Right-handed alpha
Helix 62	AG8	E	870	879	Right-handed alpha
Helix 63	AG9	E	883	887	Right-handed 310
Helix 64	AH1	E	888	893	Right-handed alpha
Helix 65	AH2	E	901	912	Right-handed alpha
Helix 66	AH3	E	915	924	Right-handed alpha
Helix 67	AH4	E	925	952	Right-handed alpha
Helix 68	AH5	E	953	971	Right-handed alpha
Helix 69	AH6	E	986	990	Right-handed 310
Helix 70	AH7	E	1001	1014	Right-handed alpha
Helix 71	AH8	E	1019	1024	Right-handed alpha
Helix 72	AH9	E	1026	1033	Right-handed alpha
Helix 73	AI1	E	1034	1059	Right-handed alpha
Helix 74	AI2	E	1069	1106	Right-handed alpha
Helix 75	AI3	E	1113	1148	Right-handed alpha
Helix 76	AI4	F	791	802	Right-handed alpha
Helix 77	AI5	F	836	851	Right-handed alpha
Helix 78	AI6	F	853	864	Right-handed alpha
Helix 79	AI7	F	870	881	Right-handed alpha
Helix 80	AI8	F	885	893	Right-handed alpha
Helix 81	AI9	F	901	913	Right-handed alpha
Helix 82	AJ1	F	915	924	Right-handed alpha
Helix 83	AJ2	F	925	952	Right-handed alpha
Helix 84	AJ3	F	953	971	Right-handed alpha
Helix 85	AJ4	F	986	991	Right-handed 310
Helix 86	AJ5	F	1001	1014	Right-handed alpha
Helix 87	AJ6	F	1019	1024	Right-handed alpha
Helix 88	AJ7	F	1026	1032	Right-handed alpha
Helix 89	AJ8	F	1034	1059	Right-handed alpha
Helix 90	AJ9	F	1069	1105	Right-handed alpha
Helix 91	AK1	F	1113	1148	Right-handed alpha

There are 16 sheets in PDB entry 8RU2. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	30	32	first strand
Strand 2	B	16	21	anti-parallel
Strand 3	B	8	11	anti-parallel
Strand 4	B	103	107	parallel
Strand 5	B	132	136	parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	53	54	first strand
Strand 2	B	35	38	anti-parallel
Strand 3	B	65	68	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	71	72	first strand
Strand 2	B	75	76	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	176	178	first strand
Strand 2	B	160	163	anti-parallel
Strand 3	B	152	155	anti-parallel
Strand 4	B	298	300	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	165	166	first strand
Strand 2	B	169	170	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	239	241	first strand
Strand 2	B	247	249	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	29	31	first strand
Strand 2	C	17	21	anti-parallel
Strand 3	C	8	11	anti-parallel
Strand 4	C	103	107	parallel
Strand 5	C	131	136	parallel
Strand 6	C	357	358	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	35	36	first strand
Strand 2	C	53	54	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	71	72	first strand
Strand 2	C	75	76	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	160	163	first strand
Strand 2	C	152	155	anti-parallel
Strand 3	C	298	300	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	238	241	first strand
Strand 2	C	247	250	anti-parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	29	32	first strand
Strand 2	D	16	19	anti-parallel
Strand 3	D	8	11	anti-parallel
Strand 4	D	103	107	parallel
Strand 5	D	131	136	parallel
Strand 6	D	357	358	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	53	54	first strand
Strand 2	D	35	38	anti-parallel
Strand 3	D	65	68	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	71	72	first strand
Strand 2	D	75	76	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	176	178	first strand
Strand 2	D	160	163	anti-parallel
Strand 3	D	151	154	anti-parallel
Strand 4	D	297	299	parallel
Strand 5	D	329	330	parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	239	241	first strand
Strand 2	D	247	249	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8RU2

Analysis of interatomic Contacts of Structural Units in PDB entry:
8RU2