Analysis of interatomic Contacts of Structural Units in PDB entry:
8RU6


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8RU6 entry

There is 1 chain in PDB entry 8RU6 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 ARG 3HIS 486
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 29 helices in PDB entry 8RU6. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
21 25Right-handed 310
Helix 2
AA2
B
39 45Right-handed alpha
Helix 3
AA3
B
62 66Right-handed 310
Helix 4
AA4
B
70 76Right-handed alpha
Helix 5
AA5
B
87 96Right-handed alpha
Helix 6
AA6
B
108 119Right-handed 310
Helix 7
AA7
B
126 138Right-handed alpha
Helix 8
AA8
B
144 165Right-handed alpha
Helix 9
AA9
B
179 190Right-handed alpha
Helix 10
AB1
B
191 197Right-handed 310
Helix 11
AB2
B
202 212Right-handed alpha
Helix 12
AB3
B
213 220Right-handed alpha
Helix 13
AB4
B
222 224Right-handed 310
Helix 14
AB5
B
235 242Right-handed alpha
Helix 15
AB6
B
260 271Right-handed alpha
Helix 16
AB7
B
273 277Right-handed 310
Helix 17
AB8
B
290 295Right-handed alpha
Helix 18
AB9
B
296 298Right-handed 310
Helix 19
AC1
B
300 316Right-handed alpha
Helix 20
AC2
B
324 328Right-handed 310
Helix 21
AC3
B
355 365Right-handed alpha
Helix 22
AC4
B
381 385Right-handed 310
Helix 23
AC5
B
396 415Right-handed alpha
Helix 24
AC6
B
419 422Right-handed 310
Helix 25
AC7
B
423 433Right-handed alpha
Helix 26
AC8
B
439 447Right-handed alpha
Helix 27
AC9
B
454 463Right-handed alpha
Helix 28
AD1
B
470 475Right-handed alpha
Helix 29
AD2
B
478 482Right-handed 310
Back to top of page

There are 4 sheets in PDB entry 8RU6. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
4 6first strand
Strand 2
B
9 11anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
28 30first strand
Strand 2
B
81 83anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
141 142first strand
Strand 2
B
101 106parallel
Strand 3
B
226 232parallel
Strand 4
B
256 259parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
174 175first strand
Strand 2
B
372 376parallel
Strand 3
B
343 351parallel
Strand 4
B
333 340anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il