Analysis of interatomic Contacts of Structural Units in PDB entry:
8RUD

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8RUD entry

There are 4 chains in PDB entry 8RUD (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 4	SER 353
B	SER 4	GLY 352
C	SER 4	GLY 352
D	SER 4	LEU 283

There are 76 helices in PDB entry 8RUD. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	47	49	Right-handed 310
Helix 2	AA2	A	50	60	Right-handed alpha
Helix 3	AA3	A	63	68	Right-handed 310
Helix 4	AA4	A	70	78	Right-handed alpha
Helix 5	AA5	A	84	98	Right-handed alpha
Helix 6	AA6	A	101	105	Right-handed 310
Helix 7	AA7	A	114	125	Right-handed alpha
Helix 8	AA8	A	129	133	Right-handed 310
Helix 9	AA9	A	135	149	Right-handed alpha
Helix 10	AB1	A	161	175	Right-handed alpha
Helix 11	AB2	A	178	182	Right-handed 310
Helix 12	AB3	A	198	217	Right-handed alpha
Helix 13	AB4	A	222	238	Right-handed alpha
Helix 14	AB5	A	238	243	Right-handed alpha
Helix 15	AB6	A	247	257	Right-handed alpha
Helix 16	AB7	A	277	283	Right-handed alpha
Helix 17	AB8	A	299	315	Right-handed alpha
Helix 18	AB9	A	318	323	Right-handed alpha
Helix 19	AC1	A	325	330	Right-handed alpha
Helix 20	AC2	B	47	49	Right-handed 310
Helix 21	AC3	B	50	60	Right-handed alpha
Helix 22	AC4	B	63	68	Right-handed 310
Helix 23	AC5	B	70	78	Right-handed alpha
Helix 24	AC6	B	84	98	Right-handed alpha
Helix 25	AC7	B	101	105	Right-handed 310
Helix 26	AC8	B	114	125	Right-handed alpha
Helix 27	AC9	B	129	133	Right-handed 310
Helix 28	AD1	B	135	150	Right-handed alpha
Helix 29	AD2	B	161	176	Right-handed alpha
Helix 30	AD3	B	178	182	Right-handed 310
Helix 31	AD4	B	198	217	Right-handed alpha
Helix 32	AD5	B	222	238	Right-handed alpha
Helix 33	AD6	B	238	243	Right-handed alpha
Helix 34	AD7	B	247	257	Right-handed alpha
Helix 35	AD8	B	277	283	Right-handed alpha
Helix 36	AD9	B	299	315	Right-handed alpha
Helix 37	AE1	B	318	324	Right-handed alpha
Helix 38	AE2	B	325	330	Right-handed alpha
Helix 39	AE3	C	47	49	Right-handed 310
Helix 40	AE4	C	50	60	Right-handed alpha
Helix 41	AE5	C	63	68	Right-handed 310
Helix 42	AE6	C	70	78	Right-handed alpha
Helix 43	AE7	C	84	98	Right-handed alpha
Helix 44	AE8	C	101	105	Right-handed 310
Helix 45	AE9	C	114	124	Right-handed alpha
Helix 46	AF1	C	129	133	Right-handed 310
Helix 47	AF2	C	135	149	Right-handed alpha
Helix 48	AF3	C	161	176	Right-handed alpha
Helix 49	AF4	C	178	182	Right-handed 310
Helix 50	AF5	C	198	217	Right-handed alpha
Helix 51	AF6	C	222	238	Right-handed alpha
Helix 52	AF7	C	238	243	Right-handed alpha
Helix 53	AF8	C	247	257	Right-handed alpha
Helix 54	AF9	C	277	283	Right-handed alpha
Helix 55	AG1	C	299	315	Right-handed alpha
Helix 56	AG2	C	318	323	Right-handed alpha
Helix 57	AG3	C	325	330	Right-handed alpha
Helix 58	AG4	D	47	49	Right-handed 310
Helix 59	AG5	D	50	60	Right-handed alpha
Helix 60	AG6	D	63	68	Right-handed 310
Helix 61	AG7	D	70	78	Right-handed alpha
Helix 62	AG8	D	84	98	Right-handed alpha
Helix 63	AG9	D	101	105	Right-handed 310
Helix 64	AH1	D	114	125	Right-handed alpha
Helix 65	AH2	D	129	133	Right-handed 310
Helix 66	AH3	D	135	150	Right-handed alpha
Helix 67	AH4	D	161	176	Right-handed alpha
Helix 68	AH5	D	178	182	Right-handed 310
Helix 69	AH6	D	198	217	Right-handed alpha
Helix 70	AH7	D	222	238	Right-handed alpha
Helix 71	AH8	D	238	243	Right-handed alpha
Helix 72	AH9	D	247	257	Right-handed alpha
Helix 73	AI1	D	277	283	Right-handed alpha
Helix 74	AI2	D	299	314	Right-handed alpha
Helix 75	AI3	D	318	324	Right-handed alpha
Helix 76	AI4	D	325	330	Right-handed alpha

There are 12 sheets in PDB entry 8RUD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	33	37	first strand
Strand 2	A	15	28	anti-parallel
Strand 3	A	289	295	anti-parallel
Strand 4	A	269	274	anti-parallel
Strand 5	A	260	265	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	33	37	first strand
Strand 2	A	15	28	anti-parallel
Strand 3	A	7	12	anti-parallel
Strand 4	A	342	345	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	43	45	first strand
Strand 2	A	192	197	anti-parallel
Strand 3	A	183	186	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	33	37	first strand
Strand 2	B	15	28	anti-parallel
Strand 3	B	289	295	anti-parallel
Strand 4	B	269	274	anti-parallel
Strand 5	B	260	265	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	33	37	first strand
Strand 2	B	15	28	anti-parallel
Strand 3	B	7	12	anti-parallel
Strand 4	B	342	345	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	43	45	first strand
Strand 2	B	192	197	anti-parallel
Strand 3	B	183	186	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	33	37	first strand
Strand 2	C	15	28	anti-parallel
Strand 3	C	289	295	anti-parallel
Strand 4	C	269	274	anti-parallel
Strand 5	C	260	265	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	33	37	first strand
Strand 2	C	15	28	anti-parallel
Strand 3	C	7	12	anti-parallel
Strand 4	C	342	345	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	43	45	first strand
Strand 2	C	192	197	anti-parallel
Strand 3	C	183	186	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	33	37	first strand
Strand 2	D	15	28	anti-parallel
Strand 3	D	289	295	anti-parallel
Strand 4	D	269	274	anti-parallel
Strand 5	D	260	265	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	33	37	first strand
Strand 2	D	15	28	anti-parallel
Strand 3	D	7	12	anti-parallel
Strand 4	D	342	345	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	43	45	first strand
Strand 2	D	192	197	anti-parallel
Strand 3	D	183	186	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8RUD

Analysis of interatomic Contacts of Structural Units in PDB entry:
8RUD