Analysis of interatomic Contacts of Structural Units in PDB entry:
8RUW


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8RUW entry

There are 3 chains in PDB entry 8RUW (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 ARG 2PRO 231
A
 MET 1PRO 231
C
 ARG 2ARG 207
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 69 helices in PDB entry 8RUW. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
2 6Right-handed 310
Helix 2
AA2
B
19 30Right-handed alpha
Helix 3
AA3
B
43 56Right-handed alpha
Helix 4
AA4
B
93 102Right-handed alpha
Helix 5
AA5
B
103 105Right-handed 310
Helix 6
AA6
B
106 116Right-handed alpha
Helix 7
AA7
B
131 138Right-handed alpha
Helix 8
AA8
B
144 158Right-handed alpha
Helix 9
AA9
B
174 185Right-handed alpha
Helix 10
AB1
B
198 207Right-handed alpha
Helix 11
AB2
B
215 221Right-handed alpha
Helix 12
AB3
B
222 229Right-handed alpha
Helix 13
AB4
A
1 6Right-handed 310
Helix 14
AB5
A
19 29Right-handed alpha
Helix 15
AB6
A
43 55Right-handed alpha
Helix 16
AB7
A
93 102Right-handed alpha
Helix 17
AB8
A
103 105Right-handed 310
Helix 18
AB9
A
106 116Right-handed alpha
Helix 19
AC1
A
131 137Right-handed alpha
Helix 20
AC2
A
144 158Right-handed alpha
Helix 21
AC3
A
174 185Right-handed alpha
Helix 22
AC4
A
198 209Right-handed alpha
Helix 23
AC5
A
215 221Right-handed alpha
Helix 24
AC6
A
222 229Right-handed alpha
Helix 25
AC7
C
2 6Right-handed 310
Helix 26
AC8
C
19 29Right-handed alpha
Helix 27
AC9
C
45 57Right-handed alpha
Helix 28
AD1
C
88 92Right-handed 310
Helix 29
AD2
C
93 102Right-handed alpha
Helix 30
AD3
C
106 116Right-handed alpha
Helix 31
AD4
C
131 138Right-handed alpha
Helix 32
AD5
C
144 158Right-handed alpha
Helix 33
AD6
C
174 185Right-handed alpha
Helix 34
AD7
C
198 209Right-handed alpha
Helix 35
AD8
C
215 220Right-handed alpha
Helix 36
AD9
C
222 228Right-handed alpha
Helix 37
AE1
D
1 6Right-handed 310
Helix 38
AE2
D
19 30Right-handed alpha
Helix 39
AE3
D
45 56Right-handed alpha
Helix 40
AE4
D
93 103Right-handed alpha
Helix 41
AE5
D
104 111Right-handed 310
Helix 42
AE6
D
131 138Right-handed alpha
Helix 43
AE7
D
144 158Right-handed alpha
Helix 44
AE8
D
174 185Right-handed alpha
Helix 45
AE9
D
198 206Right-handed alpha
Helix 46
AF1
D
215 221Right-handed alpha
Helix 47
AF2
D
222 227Right-handed alpha
Helix 48
AF3
D
228 230Right-handed 310
Helix 49
AF4
E
1 6Right-handed 310
Helix 50
AF5
E
19 28Right-handed alpha
Helix 51
AF6
E
44 55Right-handed alpha
Helix 52
AF7
E
93 103Right-handed alpha
Helix 53
AF8
E
104 111Right-handed 310
Helix 54
AF9
E
131 138Right-handed alpha
Helix 55
AG1
E
144 158Right-handed alpha
Helix 56
AG2
E
174 185Right-handed alpha
Helix 57
AG3
E
198 207Right-handed alpha
Helix 58
AG4
E
215 221Right-handed alpha
Helix 59
AG5
E
222 228Right-handed alpha
Helix 60
AG6
F
20 28Right-handed alpha
Helix 61
AG7
F
48 52Right-handed 310
Helix 62
AG8
F
93 103Right-handed alpha
Helix 63
AG9
F
106 116Right-handed alpha
Helix 64
AH1
F
131 137Right-handed alpha
Helix 65
AH2
F
144 158Right-handed alpha
Helix 66
AH3
F
174 185Right-handed alpha
Helix 67
AH4
F
198 209Right-handed alpha
Helix 68
AH5
F
215 221Right-handed alpha
Helix 69
AH6
F
222 230Right-handed alpha
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There are 6 sheets in PDB entry 8RUW. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
8 12first strand
Strand 2
B
33 37parallel
Strand 3
B
61 64parallel
Strand 4
B
77 83parallel
Strand 5
B
119 126parallel
Strand 6
B
163 167parallel
Strand 7
B
189 193parallel
Strand 8
B
211 214parallel
Strand 9
B
8 12parallel
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There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
8 12first strand
Strand 2
A
33 36parallel
Strand 3
A
61 63parallel
Strand 4
A
77 83parallel
Strand 5
A
119 126parallel
Strand 6
A
163 167parallel
Strand 7
A
189 193parallel
Strand 8
A
211 214parallel
Strand 9
A
8 12parallel
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There are 9 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
8 12first strand
Strand 2
C
33 36parallel
Strand 3
C
61 63parallel
Strand 4
C
77 83parallel
Strand 5
C
119 126parallel
Strand 6
C
163 167parallel
Strand 7
C
189 193parallel
Strand 8
C
211 214parallel
Strand 9
C
8 12parallel
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There are 9 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
8 12first strand
Strand 2
D
33 36parallel
Strand 3
D
61 63parallel
Strand 4
D
77 83parallel
Strand 5
D
119 126parallel
Strand 6
D
163 167parallel
Strand 7
D
189 193parallel
Strand 8
D
211 214parallel
Strand 9
D
8 12parallel
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There are 9 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
8 12first strand
Strand 2
E
33 36parallel
Strand 3
E
61 63parallel
Strand 4
E
77 83parallel
Strand 5
E
119 126parallel
Strand 6
E
163 167parallel
Strand 7
E
189 193parallel
Strand 8
E
211 214parallel
Strand 9
E
8 12parallel
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There are 9 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
8 12first strand
Strand 2
F
33 37parallel
Strand 3
F
61 64parallel
Strand 4
F
77 83parallel
Strand 5
F
119 126parallel
Strand 6
F
163 167parallel
Strand 7
F
189 193parallel
Strand 8
F
211 214parallel
Strand 9
F
8 12parallel
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