Analysis of interatomic Contacts of Structural Units in PDB entry:
8RV0


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8RV0 entry

There is 1 chain in PDB entry 8RV0 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
Y
 GLY 38GLN 532
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 28 helices in PDB entry 8RV0. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
Y
38 44Right-handed alpha
Helix 2
AA2
Y
46 54Right-handed alpha
Helix 3
AA3
Y
62 65Right-handed 310
Helix 4
AA4
Y
69 76Right-handed alpha
Helix 5
AA5
Y
87 95Right-handed alpha
Helix 6
AA6
Y
95 104Right-handed alpha
Helix 7
AA7
Y
125 130Right-handed alpha
Helix 8
AA8
Y
133 137Right-handed 310
Helix 9
AA9
Y
144 146Right-handed 310
Helix 10
AB1
Y
147 155Right-handed alpha
Helix 11
AB2
Y
167 172Right-handed 310
Helix 12
AB3
Y
177 181Right-handed alpha
Helix 13
AB4
Y
199 206Right-handed 310
Helix 14
AB5
Y
215 219Right-handed 310
Helix 15
AB6
Y
229 235Right-handed alpha
Helix 16
AB7
Y
242 246Right-handed 310
Helix 17
AB8
Y
258 268Right-handed alpha
Helix 18
AB9
Y
300 306Right-handed alpha
Helix 19
AC1
Y
330 334Right-handed 310
Helix 20
AC2
Y
343 351Right-handed alpha
Helix 21
AC3
Y
371 377Right-handed alpha
Helix 22
AC4
Y
379 384Right-handed alpha
Helix 23
AC5
Y
387 393Right-handed alpha
Helix 24
AC6
Y
411 414Right-handed 310
Helix 25
AC7
Y
415 420Right-handed alpha
Helix 26
AC8
Y
428 467Right-handed alpha
Helix 27
AC9
Y
470 494Right-handed alpha
Helix 28
AD1
Y
501 529Right-handed alpha
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There are 6 sheets in PDB entry 8RV0. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
Y
67 68first strand
Strand 2
Y
83 84anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
Y
163 165first strand
Strand 2
Y
182 184anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
Y
255 256first strand
Strand 2
Y
291 295anti-parallel
Strand 3
Y
283 287anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
Y
317 318first strand
Strand 2
Y
325 326anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
Y
356 357first strand
Strand 2
Y
364 365anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
Y
395 397first strand
Strand 2
Y
403 405anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il