Analysis of interatomic Contacts of Structural Units in PDB entry:
8RV3


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8RV3 entry

There are 2 chains in PDB entry 8RV3 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 530ALA 658
B
 ARG 530GLY 657
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 8RV3. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
555 571Right-handed alpha
Helix 2
AA2
A
573 586Right-handed alpha
Helix 3
AA3
A
599 612Right-handed alpha
Helix 4
AA4
A
620 629Right-handed alpha
Helix 5
AA5
A
631 640Right-handed alpha
Helix 6
AA6
A
644 656Right-handed alpha
Helix 7
AA7
B
555 571Right-handed alpha
Helix 8
AA8
B
573 586Right-handed alpha
Helix 9
AA9
B
599 612Right-handed alpha
Helix 10
AB1
B
620 629Right-handed alpha
Helix 11
AB2
B
631 641Right-handed alpha
Helix 12
AB3
B
644 657Right-handed alpha
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There are 3 sheets in PDB entry 8RV3. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
532 534first strand
Strand 2
A
538 543anti-parallel
Strand 3
A
546 551anti-parallel
Strand 4
B
546 551anti-parallel
Strand 5
B
538 543anti-parallel
Strand 6
B
531 534anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
592 593first strand
Strand 2
A
596 597anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
592 593first strand
Strand 2
B
596 597anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il