Analysis of interatomic Contacts of Structural Units in PDB entry:
8RVJ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8RVJ entry

There are 4 chains in PDB entry 8RVJ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	GLU 315
B	ASN 2	PRO 314
C	MET 1	PRO 314
D	ASN 2	GLU 315

There are 37 helices in PDB entry 8RVJ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	2	7	Right-handed alpha
Helix 2	AA2	A	13	32	Right-handed alpha
Helix 3	AA3	A	33	37	Right-handed 310
Helix 4	AA4	A	128	139	Right-handed alpha
Helix 5	AA5	A	144	165	Right-handed alpha
Helix 6	AA6	A	192	207	Right-handed alpha
Helix 7	AA7	A	219	228	Right-handed alpha
Helix 8	AA8	A	236	245	Right-handed alpha
Helix 9	AA9	A	304	306	Right-handed 310
Helix 10	AB1	B	3	7	Right-handed alpha
Helix 11	AB2	B	13	30	Right-handed alpha
Helix 12	AB3	B	33	37	Right-handed 310
Helix 13	AB4	B	128	139	Right-handed alpha
Helix 14	AB5	B	144	165	Right-handed alpha
Helix 15	AB6	B	192	208	Right-handed alpha
Helix 16	AB7	B	219	226	Right-handed alpha
Helix 17	AB8	B	236	245	Right-handed alpha
Helix 18	AB9	B	304	306	Right-handed 310
Helix 19	AC1	C	2	7	Right-handed alpha
Helix 20	AC2	C	13	30	Right-handed alpha
Helix 21	AC3	C	33	38	Right-handed alpha
Helix 22	AC4	C	128	139	Right-handed alpha
Helix 23	AC5	C	144	165	Right-handed alpha
Helix 24	AC6	C	192	208	Right-handed alpha
Helix 25	AC7	C	219	226	Right-handed alpha
Helix 26	AC8	C	236	245	Right-handed alpha
Helix 27	AC9	C	304	306	Right-handed 310
Helix 28	AD1	D	3	7	Right-handed alpha
Helix 29	AD2	D	13	32	Right-handed alpha
Helix 30	AD3	D	33	38	Right-handed alpha
Helix 31	AD4	D	128	139	Right-handed alpha
Helix 32	AD5	D	144	165	Right-handed alpha
Helix 33	AD6	D	166	170	Right-handed 310
Helix 34	AD7	D	192	208	Right-handed alpha
Helix 35	AD8	D	219	224	Right-handed alpha
Helix 36	AD9	D	236	245	Right-handed alpha
Helix 37	AE1	D	304	306	Right-handed 310

There are 13 sheets in PDB entry 8RVJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	40	43	first strand
Strand 2	A	270	282	parallel
Strand 3	A	290	302	anti-parallel
Strand 4	A	120	127	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	50	55	first strand
Strand 2	A	112	117	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	181	184	first strand
Strand 2	A	308	312	parallel
Strand 3	A	259	264	anti-parallel
Strand 4	A	214	218	anti-parallel
Strand 5	A	249	251	parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	39	41	first strand
Strand 2	B	270	282	parallel
Strand 3	B	290	302	anti-parallel
Strand 4	B	120	123	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	39	41	first strand
Strand 2	B	270	282	parallel
Strand 3	B	290	302	anti-parallel
Strand 4	B	126	127	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	50	55	first strand
Strand 2	B	112	117	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	181	184	first strand
Strand 2	B	308	312	parallel
Strand 3	B	260	264	anti-parallel
Strand 4	B	214	218	anti-parallel
Strand 5	B	249	251	parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	39	41	first strand
Strand 2	C	270	282	parallel
Strand 3	C	290	302	anti-parallel
Strand 4	C	120	127	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	50	55	first strand
Strand 2	C	112	117	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	181	184	first strand
Strand 2	C	308	312	parallel
Strand 3	C	259	264	anti-parallel
Strand 4	C	214	218	anti-parallel
Strand 5	C	249	251	parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	39	43	first strand
Strand 2	D	270	282	parallel
Strand 3	D	290	302	anti-parallel
Strand 4	D	120	127	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	50	55	first strand
Strand 2	D	112	117	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	181	184	first strand
Strand 2	D	308	312	parallel
Strand 3	D	259	264	anti-parallel
Strand 4	D	214	218	anti-parallel
Strand 5	D	249	251	parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8RVJ

Analysis of interatomic Contacts of Structural Units in PDB entry:
8RVJ