Analysis of interatomic Contacts of Structural Units in PDB entry:
8RVN

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8RVN entry

There are 5 chains in PDB entry 8RVN (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
F	ILE 27	ALA 477
B	ILE 27	ALA 477
C	ILE 27	ALA 477
H	GLN 2	SER 112
L	LEU 4	VAL 106

There are 45 helices in PDB entry 8RVN. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	F	29	34	Right-handed alpha
Helix 2	AA2	F	35	37	Right-handed 310
Helix 3	AA3	F	65	69	Right-handed 310
Helix 4	AA4	F	74	101	Right-handed alpha
Helix 5	AA5	F	117	121	Right-handed alpha
Helix 6	AA6	F	125	137	Right-handed alpha
Helix 7	AA7	F	137	146	Right-handed alpha
Helix 8	AA8	F	147	153	Right-handed alpha
Helix 9	AA9	F	175	182	Right-handed alpha
Helix 10	AB1	F	191	215	Right-handed alpha
Helix 11	AB2	F	228	232	Right-handed alpha
Helix 12	AB3	F	238	247	Right-handed alpha
Helix 13	AB4	F	252	259	Right-handed alpha
Helix 14	AB5	F	349	357	Right-handed alpha
Helix 15	AB6	F	359	363	Right-handed 310
Helix 16	AB7	F	452	477	Right-handed alpha
Helix 17	AB8	B	29	35	Right-handed alpha
Helix 18	AB9	B	65	69	Right-handed 310
Helix 19	AC1	B	74	100	Right-handed alpha
Helix 20	AC2	B	125	145	Right-handed alpha
Helix 21	AC3	B	148	153	Right-handed alpha
Helix 22	AC4	B	176	183	Right-handed alpha
Helix 23	AC5	B	191	211	Right-handed alpha
Helix 24	AC6	B	228	232	Right-handed alpha
Helix 25	AC7	B	233	236	Right-handed 310
Helix 26	AC8	B	238	247	Right-handed alpha
Helix 27	AC9	B	252	259	Right-handed alpha
Helix 28	AD1	B	349	357	Right-handed alpha
Helix 29	AD2	B	358	363	Right-handed 310
Helix 30	AD3	B	452	477	Right-handed alpha
Helix 31	AD4	C	29	35	Right-handed alpha
Helix 32	AD5	C	74	98	Right-handed alpha
Helix 33	AD6	C	116	121	Right-handed alpha
Helix 34	AD7	C	124	146	Right-handed alpha
Helix 35	AD8	C	147	153	Right-handed alpha
Helix 36	AD9	C	175	182	Right-handed alpha
Helix 37	AE1	C	191	215	Right-handed alpha
Helix 38	AE2	C	228	232	Right-handed alpha
Helix 39	AE3	C	233	236	Right-handed 310
Helix 40	AE4	C	238	246	Right-handed alpha
Helix 41	AE5	C	252	259	Right-handed alpha
Helix 42	AE6	C	349	357	Right-handed alpha
Helix 43	AE7	C	359	363	Right-handed 310
Helix 44	AE8	C	452	477	Right-handed alpha
Helix 45	AE9	H	83	87	Right-handed 310

There are 23 sheets in PDB entry 8RVN. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	158	161	first strand
Strand 2	F	169	173	anti-parallel
Strand 3	F	39	60	parallel
Strand 4	F	275	297	anti-parallel
Strand 5	F	337	340	first strand
Strand 6	F	332	333	anti-parallel

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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	226	227	first strand
Strand 2	F	263	270	anti-parallel
Strand 3	F	275	297	anti-parallel
Strand 4	F	39	60	anti-parallel
Strand 5	F	315	319	first strand
Strand 6	F	322	326	anti-parallel
Strand 7	F	345	346	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	114	116	first strand
Strand 2	B	426	428	parallel
Strand 3	B	419	420	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	122	124	first strand
Strand 2	B	376	379	anti-parallel
Strand 3	B	383	385	anti-parallel
Strand 4	B	410	412	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	301	303	first strand
Strand 2	F	306	310	anti-parallel
Strand 3	F	365	367	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	376	379	first strand
Strand 2	F	382	385	anti-parallel
Strand 3	F	410	412	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	392	394	first strand
Strand 2	F	420	422	anti-parallel
Strand 3	F	425	427	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	158	161	first strand
Strand 2	B	169	173	anti-parallel
Strand 3	B	38	60	parallel
Strand 4	B	275	298	anti-parallel
Strand 5	B	337	340	first strand
Strand 6	B	332	333	anti-parallel

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There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	226	227	first strand
Strand 2	B	263	270	anti-parallel
Strand 3	B	275	298	anti-parallel
Strand 4	B	38	60	anti-parallel
Strand 5	B	315	319	first strand
Strand 6	B	322	326	anti-parallel
Strand 7	B	345	346	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	101	102	first strand
Strand 2	B	114	115	anti-parallel
Strand 3	C	425	428	parallel
Strand 4	C	419	422	anti-parallel
Strand 5	C	392	394	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	123	124	first strand
Strand 2	C	376	378	anti-parallel
Strand 3	C	383	385	anti-parallel
Strand 4	C	410	412	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	308	310	first strand
Strand 2	B	365	367	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	392	393	first strand
Strand 2	B	400	401	anti-parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	158	161	first strand
Strand 2	C	169	172	anti-parallel
Strand 3	C	38	60	parallel
Strand 4	C	275	298	anti-parallel
Strand 5	C	337	340	first strand
Strand 6	C	332	334	anti-parallel

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There are 7 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	226	227	first strand
Strand 2	C	263	270	anti-parallel
Strand 3	C	275	298	anti-parallel
Strand 4	C	38	60	anti-parallel
Strand 5	C	315	319	first strand
Strand 6	C	322	326	anti-parallel
Strand 7	C	345	346	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	101	102	first strand
Strand 2	C	114	115	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	301	303	first strand
Strand 2	C	306	310	anti-parallel
Strand 3	C	365	367	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	5	7	first strand
Strand 2	H	21	23	anti-parallel
Strand 3	H	76	80	anti-parallel
Strand 4	H	67	71	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	45	47	first strand
Strand 2	H	34	39	anti-parallel
Strand 3	H	88	94	anti-parallel
Strand 4	H	102	103	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	45	47	first strand
Strand 2	H	34	39	anti-parallel
Strand 3	H	88	94	anti-parallel
Strand 4	H	107	109	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	50	51	first strand
Strand 2	H	57	58	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	19	23	first strand
Strand 2	L	70	75	anti-parallel
Strand 3	L	63	67	anti-parallel

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There are 5 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	53	54	first strand
Strand 2	L	45	49	anti-parallel
Strand 3	L	34	38	anti-parallel
Strand 4	L	85	89	anti-parallel
Strand 5	L	102	103	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8RVN

Analysis of interatomic Contacts of Structural Units in PDB entry:
8RVN