Analysis of interatomic Contacts of Structural Units in PDB entry:
8RVV

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8RVV entry

There are 6 chains in PDB entry 8RVV (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PRO 12	ASN 654
B	MET 1	VAL 284
C	THR 2	LEU 184
D	MET 2	ALA 340
E	MET 1	ASP 380
F	PHE 3	LEU 131

There are 91 helices in PDB entry 8RVV. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	30	41	Right-handed alpha
Helix 2	AA2	A	55	70	Right-handed alpha
Helix 3	AA3	A	80	95	Right-handed alpha
Helix 4	AA4	A	98	100	Right-handed 310
Helix 5	AA5	A	118	139	Right-handed alpha
Helix 6	AA6	A	160	173	Right-handed alpha
Helix 7	AA7	A	189	193	Right-handed 310
Helix 8	AA8	A	203	217	Right-handed alpha
Helix 9	AA9	A	258	264	Right-handed alpha
Helix 10	AB1	A	271	274	Right-handed 310
Helix 11	AB2	A	305	311	Right-handed alpha
Helix 12	AB3	A	342	350	Right-handed 310
Helix 13	AB4	A	360	368	Right-handed alpha
Helix 14	AB5	A	399	403	Right-handed 310
Helix 15	AB6	A	410	426	Right-handed alpha
Helix 16	AB7	A	444	455	Right-handed alpha
Helix 17	AB8	A	507	516	Right-handed alpha
Helix 18	AB9	A	546	550	Right-handed 310
Helix 19	AC1	A	553	575	Right-handed alpha
Helix 20	AC2	A	624	630	Right-handed alpha
Helix 21	AC3	A	641	654	Right-handed alpha
Helix 22	AC4	B	9	15	Right-handed alpha
Helix 23	AC5	B	15	29	Right-handed alpha
Helix 24	AC6	B	44	52	Right-handed alpha
Helix 25	AC7	B	52	70	Right-handed alpha
Helix 26	AC8	B	78	94	Right-handed alpha
Helix 27	AC9	B	95	108	Right-handed alpha
Helix 28	AD1	B	122	129	Right-handed alpha
Helix 29	AD2	B	131	138	Right-handed alpha
Helix 30	AD3	B	158	163	Right-handed alpha
Helix 31	AD4	B	171	179	Right-handed alpha
Helix 32	AD5	B	196	198	Right-handed 310
Helix 33	AD6	B	199	204	Right-handed alpha
Helix 34	AD7	B	204	223	Right-handed alpha
Helix 35	AD8	B	231	250	Right-handed alpha
Helix 36	AD9	B	260	268	Right-handed alpha
Helix 37	AE1	B	271	276	Right-handed alpha
Helix 38	AE2	B	277	280	Right-handed 310
Helix 39	AE3	C	12	16	Right-handed 310
Helix 40	AE4	C	17	27	Right-handed alpha
Helix 41	AE5	C	29	35	Right-handed 310
Helix 42	AE6	C	39	45	Right-handed alpha
Helix 43	AE7	C	46	50	Right-handed 310
Helix 44	AE8	C	54	65	Right-handed alpha
Helix 45	AE9	C	66	72	Right-handed alpha
Helix 46	AF1	C	73	79	Right-handed 310
Helix 47	AF2	C	83	89	Right-handed alpha
Helix 48	AF3	C	94	109	Right-handed alpha
Helix 49	AF4	C	113	127	Right-handed alpha
Helix 50	AF5	C	133	143	Right-handed alpha
Helix 51	AF6	C	155	170	Right-handed alpha
Helix 52	AF7	C	170	175	Right-handed alpha
Helix 53	AF8	D	43	49	Right-handed alpha
Helix 54	AF9	D	50	52	Right-handed 310
Helix 55	AG1	D	73	79	Right-handed alpha
Helix 56	AG2	D	81	88	Right-handed alpha
Helix 57	AG3	D	99	113	Right-handed alpha
Helix 58	AG4	D	133	140	Right-handed 310
Helix 59	AG5	D	148	153	Right-handed alpha
Helix 60	AG6	D	153	166	Right-handed alpha
Helix 61	AG7	D	179	185	Right-handed alpha
Helix 62	AG8	D	193	202	Right-handed alpha
Helix 63	AG9	D	216	229	Right-handed alpha
Helix 64	AH1	D	242	250	Right-handed alpha
Helix 65	AH2	D	299	303	Right-handed 310
Helix 66	AH3	D	329	340	Right-handed alpha
Helix 67	AH4	E	11	17	Right-handed alpha
Helix 68	AH5	E	21	33	Right-handed alpha
Helix 69	AH6	E	61	66	Right-handed 310
Helix 70	AH7	E	76	84	Right-handed alpha
Helix 71	AH8	E	94	106	Right-handed alpha
Helix 72	AH9	E	127	139	Right-handed alpha
Helix 73	AI1	E	170	176	Right-handed alpha
Helix 74	AI2	E	181	187	Right-handed alpha
Helix 75	AI3	E	215	228	Right-handed alpha
Helix 76	AI4	E	239	264	Right-handed alpha
Helix 77	AI5	E	269	278	Right-handed alpha
Helix 78	AI6	E	284	290	Right-handed alpha
Helix 79	AI7	E	298	302	Right-handed 310
Helix 80	AI8	E	314	327	Right-handed alpha
Helix 81	AI9	E	328	330	Right-handed 310
Helix 82	AJ1	E	334	340	Right-handed alpha
Helix 83	AJ2	E	345	362	Right-handed alpha
Helix 84	AJ3	E	372	376	Right-handed 310
Helix 85	AJ4	F	15	26	Right-handed alpha
Helix 86	AJ5	F	41	45	Right-handed 310
Helix 87	AJ6	F	46	57	Right-handed alpha
Helix 88	AJ7	F	75	91	Right-handed alpha
Helix 89	AJ8	F	92	95	Right-handed 310
Helix 90	AJ9	F	97	99	Right-handed 310
Helix 91	AK1	F	110	129	Right-handed alpha

There are 21 sheets in PDB entry 8RVV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	44	50	first strand
Strand 2	A	14	19	parallel
Strand 3	A	73	78	parallel
Strand 4	A	102	106	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	146	149	first strand
Strand 2	A	576	579	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	220	224	first strand
Strand 2	A	176	181	parallel
Strand 3	A	153	157	parallel
Strand 4	A	331	334	parallel
Strand 5	A	542	544	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	195	196	first strand
Strand 2	A	201	202	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	226	234	first strand
Strand 2	A	237	244	anti-parallel
Strand 3	A	323	329	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	267	269	first strand
Strand 2	A	278	280	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	282	283	first strand
Strand 2	A	295	296	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	339	340	first strand
Strand 2	A	502	503	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	357	359	first strand
Strand 2	A	495	500	parallel
Strand 3	A	388	395	parallel
Strand 4	A	430	435	parallel
Strand 5	A	459	462	parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	467	470	first strand
Strand 2	A	476	482	anti-parallel
Strand 3	A	487	493	anti-parallel
Strand 4	C	10	11	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	584	586	first strand
Strand 2	A	635	637	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	606	609	first strand
Strand 2	A	612	615	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	32	35	first strand
Strand 2	B	2	5	parallel
Strand 3	B	74	76	parallel
Strand 4	B	119	121	parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	183	184	first strand
Strand 2	B	146	150	parallel
Strand 3	B	226	229	parallel
Strand 4	B	257	259	parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	3	7	first strand
Strand 2	D	16	22	anti-parallel
Strand 3	D	25	31	anti-parallel

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There are 7 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	69	71	first strand
Strand 2	D	62	64	anti-parallel
Strand 3	D	293	294	anti-parallel
Strand 4	D	279	283	parallel
Strand 5	D	261	265	parallel
Strand 6	D	91	94	parallel
Strand 7	D	118	120	parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	187	190	first strand
Strand 2	D	169	174	parallel
Strand 3	D	142	146	parallel
Strand 4	D	209	212	parallel
Strand 5	D	233	236	parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	305	308	first strand
Strand 2	D	314	317	anti-parallel

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There are 8 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	51	56	first strand
Strand 2	E	38	44	anti-parallel
Strand 3	E	89	93	parallel
Strand 4	E	115	120	parallel
Strand 5	E	197	200	parallel
Strand 6	E	209	213	anti-parallel
Strand 7	E	3	8	anti-parallel
Strand 8	E	231	234	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	146	150	first strand
Strand 2	E	155	160	anti-parallel
Strand 3	E	165	169	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	34	39	first strand
Strand 2	F	7	12	parallel
Strand 3	F	60	65	parallel
Strand 4	F	101	105	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8RVV

Analysis of interatomic Contacts of Structural Units in PDB entry:
8RVV