Analysis of interatomic Contacts of Structural Units in PDB entry:
8RVY

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8RVY entry

There are 9 chains in PDB entry 8RVY (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 11	ASN 654
E	MET 1	ASP 380
D	MET 2	ALA 340
F	PHE 3	LEU 131
b	MET 1	LEU 291
B	MET 1	LEU 288
c	THR 2	GLU 185
C	THR 2	GLU 185
a	VAL 150	GLU 576

There are133 helices in PDB entry 8RVY. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	30	41	Right-handed alpha
Helix 2	AA2	A	55	70	Right-handed alpha
Helix 3	AA3	A	80	95	Right-handed alpha
Helix 4	AA4	A	98	100	Right-handed 310
Helix 5	AA5	A	118	139	Right-handed alpha
Helix 6	AA6	A	160	173	Right-handed alpha
Helix 7	AA7	A	189	193	Right-handed 310
Helix 8	AA8	A	203	217	Right-handed alpha
Helix 9	AA9	A	258	264	Right-handed alpha
Helix 10	AB1	A	271	274	Right-handed 310
Helix 11	AB2	A	305	311	Right-handed alpha
Helix 12	AB3	A	342	346	Right-handed 310
Helix 13	AB4	A	360	368	Right-handed alpha
Helix 14	AB5	A	410	426	Right-handed alpha
Helix 15	AB6	A	444	455	Right-handed alpha
Helix 16	AB7	A	507	516	Right-handed alpha
Helix 17	AB8	A	546	550	Right-handed 310
Helix 18	AB9	A	553	575	Right-handed alpha
Helix 19	AC1	A	597	601	Right-handed 310
Helix 20	AC2	A	624	630	Right-handed alpha
Helix 21	AC3	A	641	654	Right-handed alpha
Helix 22	AC4	E	10	17	Right-handed alpha
Helix 23	AC5	E	21	33	Right-handed alpha
Helix 24	AC6	E	61	66	Right-handed 310
Helix 25	AC7	E	76	83	Right-handed alpha
Helix 26	AC8	E	94	106	Right-handed alpha
Helix 27	AC9	E	127	139	Right-handed alpha
Helix 28	AD1	E	142	144	Right-handed 310
Helix 29	AD2	E	170	176	Right-handed alpha
Helix 30	AD3	E	181	186	Right-handed alpha
Helix 31	AD4	E	215	228	Right-handed alpha
Helix 32	AD5	E	237	263	Right-handed alpha
Helix 33	AD6	E	269	278	Right-handed alpha
Helix 34	AD7	E	284	290	Right-handed alpha
Helix 35	AD8	E	298	302	Right-handed 310
Helix 36	AD9	E	314	327	Right-handed alpha
Helix 37	AE1	E	328	330	Right-handed 310
Helix 38	AE2	E	334	340	Right-handed alpha
Helix 39	AE3	E	345	362	Right-handed alpha
Helix 40	AE4	E	372	376	Right-handed 310
Helix 41	AE5	D	43	48	Right-handed alpha
Helix 42	AE6	D	49	55	Right-handed 310
Helix 43	AE7	D	73	87	Right-handed alpha
Helix 44	AE8	D	99	114	Right-handed alpha
Helix 45	AE9	D	133	140	Right-handed 310
Helix 46	AF1	D	148	153	Right-handed alpha
Helix 47	AF2	D	153	166	Right-handed alpha
Helix 48	AF3	D	179	185	Right-handed alpha
Helix 49	AF4	D	193	202	Right-handed alpha
Helix 50	AF5	D	216	230	Right-handed alpha
Helix 51	AF6	D	242	250	Right-handed alpha
Helix 52	AF7	D	299	303	Right-handed 310
Helix 53	AF8	D	329	340	Right-handed alpha
Helix 54	AF9	F	15	26	Right-handed alpha
Helix 55	AG1	F	41	45	Right-handed 310
Helix 56	AG2	F	46	56	Right-handed alpha
Helix 57	AG3	F	75	91	Right-handed alpha
Helix 58	AG4	F	92	95	Right-handed 310
Helix 59	AG5	F	97	99	Right-handed 310
Helix 60	AG6	F	110	129	Right-handed alpha
Helix 61	AG7	b	9	14	Right-handed alpha
Helix 62	AG8	b	15	29	Right-handed alpha
Helix 63	AG9	b	44	52	Right-handed alpha
Helix 64	AH1	b	52	71	Right-handed alpha
Helix 65	AH2	b	78	94	Right-handed alpha
Helix 66	AH3	b	96	108	Right-handed alpha
Helix 67	AH4	b	122	130	Right-handed alpha
Helix 68	AH5	b	131	138	Right-handed alpha
Helix 69	AH6	b	152	157	Right-handed alpha
Helix 70	AH7	b	158	163	Right-handed alpha
Helix 71	AH8	b	171	180	Right-handed alpha
Helix 72	AH9	b	196	198	Right-handed 310
Helix 73	AI1	b	199	204	Right-handed alpha
Helix 74	AI2	b	204	223	Right-handed alpha
Helix 75	AI3	b	231	250	Right-handed alpha
Helix 76	AI4	b	260	267	Right-handed alpha
Helix 77	AI5	b	276	280	Right-handed 310
Helix 78	AI6	b	284	290	Right-handed alpha
Helix 79	AI7	B	9	14	Right-handed alpha
Helix 80	AI8	B	15	26	Right-handed alpha
Helix 81	AI9	B	44	52	Right-handed alpha
Helix 82	AJ1	B	52	69	Right-handed alpha
Helix 83	AJ2	B	78	94	Right-handed alpha
Helix 84	AJ3	B	95	107	Right-handed alpha
Helix 85	AJ4	B	122	129	Right-handed alpha
Helix 86	AJ5	B	131	139	Right-handed alpha
Helix 87	AJ6	B	152	157	Right-handed alpha
Helix 88	AJ7	B	158	163	Right-handed alpha
Helix 89	AJ8	B	171	179	Right-handed alpha
Helix 90	AJ9	B	196	198	Right-handed 310
Helix 91	AK1	B	199	204	Right-handed alpha
Helix 92	AK2	B	204	222	Right-handed alpha
Helix 93	AK3	B	231	249	Right-handed alpha
Helix 94	AK4	B	260	268	Right-handed alpha
Helix 95	AK5	B	276	280	Right-handed 310
Helix 96	AK6	c	12	16	Right-handed 310
Helix 97	AK7	c	17	27	Right-handed alpha
Helix 98	AK8	c	29	35	Right-handed 310
Helix 99	AK9	c	39	45	Right-handed alpha
Helix 100	AL1	c	54	65	Right-handed alpha
Helix 101	AL2	c	66	72	Right-handed alpha
Helix 102	AL3	c	73	79	Right-handed 310
Helix 103	AL4	c	83	89	Right-handed alpha
Helix 104	AL5	c	94	110	Right-handed alpha
Helix 105	AL6	c	113	127	Right-handed alpha
Helix 106	AL7	c	133	144	Right-handed alpha
Helix 107	AL8	c	155	169	Right-handed alpha
Helix 108	AL9	c	170	176	Right-handed alpha
Helix 109	AM1	C	12	16	Right-handed 310
Helix 110	AM2	C	17	27	Right-handed alpha
Helix 111	AM3	C	29	35	Right-handed 310
Helix 112	AM4	C	39	45	Right-handed alpha
Helix 113	AM5	C	54	65	Right-handed alpha
Helix 114	AM6	C	66	72	Right-handed alpha
Helix 115	AM7	C	73	79	Right-handed 310
Helix 116	AM8	C	83	89	Right-handed alpha
Helix 117	AM9	C	94	109	Right-handed alpha
Helix 118	AN1	C	113	127	Right-handed alpha
Helix 119	AN2	C	133	142	Right-handed alpha
Helix 120	AN3	C	155	170	Right-handed alpha
Helix 121	AN4	C	170	176	Right-handed alpha
Helix 122	AN5	a	160	173	Right-handed alpha
Helix 123	AN6	a	203	217	Right-handed alpha
Helix 124	AN7	a	258	264	Right-handed alpha
Helix 125	AN8	a	271	274	Right-handed 310
Helix 126	AN9	a	305	311	Right-handed alpha
Helix 127	AO1	a	342	346	Right-handed 310
Helix 128	AO2	a	360	368	Right-handed alpha
Helix 129	AO3	a	410	426	Right-handed alpha
Helix 130	AO4	a	444	455	Right-handed alpha
Helix 131	AO5	a	507	516	Right-handed alpha
Helix 132	AO6	a	546	550	Right-handed 310
Helix 133	AO7	a	553	575	Right-handed alpha

There are 33 sheets in PDB entry 8RVY. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	44	50	first strand
Strand 2	A	14	19	parallel
Strand 3	A	73	78	parallel
Strand 4	A	102	106	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	146	149	first strand
Strand 2	A	576	579	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	220	224	first strand
Strand 2	A	176	181	parallel
Strand 3	A	153	157	parallel
Strand 4	A	331	334	parallel
Strand 5	A	542	544	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	195	196	first strand
Strand 2	A	201	202	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	226	234	first strand
Strand 2	A	237	244	anti-parallel
Strand 3	A	323	329	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	267	269	first strand
Strand 2	A	278	280	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	282	283	first strand
Strand 2	A	295	296	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	339	340	first strand
Strand 2	A	502	503	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	357	359	first strand
Strand 2	A	495	500	parallel
Strand 3	A	388	395	parallel
Strand 4	A	430	435	parallel
Strand 5	A	459	462	parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	467	470	first strand
Strand 2	A	476	482	anti-parallel
Strand 3	A	487	493	anti-parallel
Strand 4	C	10	11	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	584	586	first strand
Strand 2	A	635	637	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	606	609	first strand
Strand 2	A	612	615	anti-parallel

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There are 8 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	51	56	first strand
Strand 2	E	38	44	anti-parallel
Strand 3	E	89	93	parallel
Strand 4	E	115	120	parallel
Strand 5	E	197	200	parallel
Strand 6	E	209	213	anti-parallel
Strand 7	E	3	8	anti-parallel
Strand 8	E	231	234	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	146	151	first strand
Strand 2	E	155	160	anti-parallel
Strand 3	E	165	169	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	3	7	first strand
Strand 2	D	16	22	anti-parallel
Strand 3	D	25	31	anti-parallel

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There are 7 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	69	71	first strand
Strand 2	D	62	64	anti-parallel
Strand 3	D	293	294	anti-parallel
Strand 4	D	279	283	parallel
Strand 5	D	261	265	parallel
Strand 6	D	91	94	parallel
Strand 7	D	118	120	parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	187	190	first strand
Strand 2	D	169	174	parallel
Strand 3	D	142	146	parallel
Strand 4	D	209	212	parallel
Strand 5	D	233	236	parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	305	308	first strand
Strand 2	D	314	317	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	34	39	first strand
Strand 2	F	7	12	parallel
Strand 3	F	60	65	parallel
Strand 4	F	101	105	parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	b	32	35	first strand
Strand 2	b	2	5	parallel
Strand 3	b	74	76	parallel
Strand 4	b	119	121	parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	b	183	184	first strand
Strand 2	b	146	149	parallel
Strand 3	b	226	229	parallel
Strand 4	b	257	259	parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	32	35	first strand
Strand 2	B	2	5	parallel
Strand 3	B	74	76	parallel
Strand 4	B	119	121	parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	183	184	first strand
Strand 2	B	146	150	parallel
Strand 3	B	226	229	parallel
Strand 4	B	257	259	parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	c	10	11	first strand
Strand 2	a	487	493	parallel
Strand 3	a	476	482	anti-parallel
Strand 4	a	467	470	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	c	177	178	first strand
Strand 2	c	183	184	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	177	178	first strand
Strand 2	C	183	184	anti-parallel

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There are 5 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	a	220	224	first strand
Strand 2	a	176	181	parallel
Strand 3	a	153	157	parallel
Strand 4	a	331	334	parallel
Strand 5	a	542	544	parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	a	195	196	first strand
Strand 2	a	201	202	anti-parallel

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There are 3 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	a	226	232	first strand
Strand 2	a	238	244	anti-parallel
Strand 3	a	323	329	anti-parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	a	267	269	first strand
Strand 2	a	278	280	anti-parallel

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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	a	282	283	first strand
Strand 2	a	295	296	anti-parallel

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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	a	339	340	first strand
Strand 2	a	502	503	anti-parallel

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There are 5 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	a	357	359	first strand
Strand 2	a	495	500	parallel
Strand 3	a	388	395	parallel
Strand 4	a	430	435	parallel
Strand 5	a	459	462	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8RVY

Analysis of interatomic Contacts of Structural Units in PDB entry:
8RVY