Analysis of interatomic Contacts of Structural Units in PDB entry:
8RX0

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8RX0 entry

There are 9 chains in PDB entry 8RX0 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 351	LYS 456
B	PRO 61	HIS 208
D	MET 17	CYS 112
C	MET 1	LYS 104
E	MET 1	GLN 658
G	MET 1	ALA 140
N	SER 0	LEU 71
R	TRP 27	GLN 104
U	MET 1	GLY 75

There are 53 helices in PDB entry 8RX0. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	351	366	Right-handed alpha
Helix 2	AA2	A	369	374	Right-handed alpha
Helix 3	AA3	A	375	377	Right-handed 310
Helix 4	AA4	A	381	386	Right-handed alpha
Helix 5	AA5	A	389	394	Right-handed alpha
Helix 6	AA6	A	399	404	Right-handed alpha
Helix 7	AA7	A	414	433	Right-handed alpha
Helix 8	AA8	A	437	456	Right-handed alpha
Helix 9	AA9	B	157	170	Right-handed alpha
Helix 10	AB1	B	173	178	Right-handed 310
Helix 11	AB2	B	181	190	Right-handed alpha
Helix 12	AB3	B	193	208	Right-handed alpha
Helix 13	AB4	D	33	37	Right-handed alpha
Helix 14	AB5	D	39	48	Right-handed alpha
Helix 15	AB6	D	66	83	Right-handed alpha
Helix 16	AB7	D	99	111	Right-handed alpha
Helix 17	AB8	C	23	36	Right-handed alpha
Helix 18	AB9	C	38	40	Right-handed 310
Helix 19	AC1	C	56	61	Right-handed alpha
Helix 20	AC2	E	9	26	Right-handed alpha
Helix 21	AC3	E	31	47	Right-handed alpha
Helix 22	AC4	E	53	80	Right-handed alpha
Helix 23	AC5	E	82	117	Right-handed alpha
Helix 24	AC6	E	138	172	Right-handed alpha
Helix 25	AC7	E	177	191	Right-handed alpha
Helix 26	AC8	E	200	207	Right-handed alpha
Helix 27	AC9	E	207	230	Right-handed alpha
Helix 28	AD1	E	231	254	Right-handed alpha
Helix 29	AD2	E	255	257	Right-handed 310
Helix 30	AD3	E	258	271	Right-handed alpha
Helix 31	AD4	E	274	288	Right-handed alpha
Helix 32	AD5	E	290	303	Right-handed alpha
Helix 33	AD6	E	307	329	Right-handed alpha
Helix 34	AD7	E	334	358	Right-handed alpha
Helix 35	AD8	E	361	377	Right-handed alpha
Helix 36	AD9	E	386	400	Right-handed alpha
Helix 37	AE1	E	407	423	Right-handed alpha
Helix 38	AE2	E	427	446	Right-handed alpha
Helix 39	AE3	E	450	497	Right-handed alpha
Helix 40	AE4	E	530	548	Right-handed alpha
Helix 41	AE5	E	579	588	Right-handed alpha
Helix 42	AE6	E	596	604	Right-handed alpha
Helix 43	AE7	E	606	620	Right-handed alpha
Helix 44	AE8	G	7	23	Right-handed alpha
Helix 45	AE9	G	119	133	Right-handed alpha
Helix 46	AF1	N	22	34	Right-handed alpha
Helix 47	AF2	N	37	41	Right-handed 310
Helix 48	AF3	N	55	60	Right-handed 310
Helix 49	AF4	R	53	58	Right-handed alpha
Helix 50	AF5	R	81	91	Right-handed alpha
Helix 51	AF6	U	22	35	Right-handed alpha
Helix 52	AF7	U	37	41	Right-handed 310
Helix 53	AF8	U	55	60	Right-handed alpha

There are 10 sheets in PDB entry 8RX0. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	107	110	first strand
Strand 2	B	73	78	anti-parallel
Strand 3	B	147	152	parallel
Strand 4	B	129	130	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	95	96	first strand
Strand 2	B	87	89	anti-parallel
Strand 3	B	117	118	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	59	60	first strand
Strand 2	D	18	22	parallel
Strand 3	D	28	32	anti-parallel
Strand 4	C	12	14	parallel
Strand 5	C	2	9	anti-parallel
Strand 6	C	16	19	anti-parallel

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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	59	60	first strand
Strand 2	D	18	22	parallel
Strand 3	D	28	32	anti-parallel
Strand 4	C	12	14	parallel
Strand 5	C	2	9	anti-parallel
Strand 6	C	73	79	parallel
Strand 7	C	42	45	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	561	565	first strand
Strand 2	E	574	578	anti-parallel
Strand 3	E	650	652	parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	593	595	first strand
Strand 2	E	637	640	anti-parallel
Strand 3	E	623	624	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	28	34	first strand
Strand 2	G	37	46	anti-parallel
Strand 3	G	57	63	anti-parallel
Strand 4	G	74	77	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	12	17	first strand
Strand 2	N	1	6	anti-parallel
Strand 3	N	66	70	parallel
Strand 4	N	42	45	anti-parallel
Strand 5	N	48	49	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	70	72	first strand
Strand 2	R	78	80	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	U	12	16	first strand
Strand 2	U	2	6	anti-parallel
Strand 3	U	66	70	parallel
Strand 4	U	42	44	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8RX0

Analysis of interatomic Contacts of Structural Units in PDB entry:
8RX0