Analysis of interatomic Contacts of Structural Units in PDB entry:
8RXD

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8RXD entry

There are 8 chains in PDB entry 8RXD (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
F	MET 1	HIS 500
A	MET 1	HIS 500
B	MET 1	HIS 500
C	MET 1	HIS 500
D	MET 1	HIS 500
E	MET 1	HIS 500
Y	T 8	T 31
Z	A 10	A 33

There are150 helices in PDB entry 8RXD. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	F	39	44	Right-handed alpha
Helix 2	AA2	F	44	56	Right-handed alpha
Helix 3	AA3	F	81	93	Right-handed alpha
Helix 4	AA4	F	97	102	Right-handed 310
Helix 5	AA5	F	122	133	Right-handed alpha
Helix 6	AA6	F	142	147	Right-handed alpha
Helix 7	AA7	F	148	150	Right-handed 310
Helix 8	AA8	F	159	170	Right-handed alpha
Helix 9	AA9	F	197	211	Right-handed alpha
Helix 10	AB1	F	224	235	Right-handed alpha
Helix 11	AB2	F	239	253	Right-handed alpha
Helix 12	AB3	F	275	280	Right-handed alpha
Helix 13	AB4	F	289	294	Right-handed alpha
Helix 14	AB5	F	308	315	Right-handed alpha
Helix 15	AB6	F	316	321	Right-handed alpha
Helix 16	AB7	F	366	373	Right-handed alpha
Helix 17	AB8	F	375	381	Right-handed alpha
Helix 18	AB9	F	392	398	Right-handed alpha
Helix 19	AC1	F	406	425	Right-handed alpha
Helix 20	AC2	F	428	432	Right-handed 310
Helix 21	AC3	F	433	437	Right-handed 310
Helix 22	AC4	F	445	459	Right-handed alpha
Helix 23	AC5	F	463	479	Right-handed alpha
Helix 24	AC6	F	485	495	Right-handed alpha
Helix 25	AC7	A	39	44	Right-handed alpha
Helix 26	AC8	A	44	56	Right-handed alpha
Helix 27	AC9	A	81	93	Right-handed alpha
Helix 28	AD1	A	97	102	Right-handed 310
Helix 29	AD2	A	122	132	Right-handed alpha
Helix 30	AD3	A	142	147	Right-handed alpha
Helix 31	AD4	A	148	150	Right-handed 310
Helix 32	AD5	A	159	168	Right-handed alpha
Helix 33	AD6	A	190	194	Right-handed 310
Helix 34	AD7	A	198	211	Right-handed alpha
Helix 35	AD8	A	223	230	Right-handed alpha
Helix 36	AD9	A	230	235	Right-handed alpha
Helix 37	AE1	A	239	254	Right-handed alpha
Helix 38	AE2	A	260	264	Right-handed 310
Helix 39	AE3	A	275	280	Right-handed alpha
Helix 40	AE4	A	303	307	Right-handed 310
Helix 41	AE5	A	308	315	Right-handed alpha
Helix 42	AE6	A	315	322	Right-handed alpha
Helix 43	AE7	A	366	374	Right-handed alpha
Helix 44	AE8	A	392	398	Right-handed alpha
Helix 45	AE9	A	407	425	Right-handed alpha
Helix 46	AF1	A	428	432	Right-handed 310
Helix 47	AF2	A	433	441	Right-handed alpha
Helix 48	AF3	A	444	458	Right-handed alpha
Helix 49	AF4	A	461	480	Right-handed alpha
Helix 50	AF5	A	485	494	Right-handed alpha
Helix 51	AF6	B	39	44	Right-handed alpha
Helix 52	AF7	B	44	56	Right-handed alpha
Helix 53	AF8	B	81	93	Right-handed alpha
Helix 54	AF9	B	97	102	Right-handed 310
Helix 55	AG1	B	122	132	Right-handed alpha
Helix 56	AG2	B	142	147	Right-handed alpha
Helix 57	AG3	B	159	170	Right-handed alpha
Helix 58	AG4	B	190	194	Right-handed 310
Helix 59	AG5	B	197	209	Right-handed alpha
Helix 60	AG6	B	223	235	Right-handed alpha
Helix 61	AG7	B	239	254	Right-handed alpha
Helix 62	AG8	B	258	262	Right-handed 310
Helix 63	AG9	B	275	280	Right-handed alpha
Helix 64	AH1	B	289	294	Right-handed alpha
Helix 65	AH2	B	308	313	Right-handed alpha
Helix 66	AH3	B	315	322	Right-handed alpha
Helix 67	AH4	B	365	373	Right-handed alpha
Helix 68	AH5	B	375	382	Right-handed alpha
Helix 69	AH6	B	392	398	Right-handed alpha
Helix 70	AH7	B	407	425	Right-handed alpha
Helix 71	AH8	B	428	432	Right-handed 310
Helix 72	AH9	B	433	438	Right-handed alpha
Helix 73	AI1	B	444	458	Right-handed alpha
Helix 74	AI2	B	461	479	Right-handed alpha
Helix 75	AI3	B	486	496	Right-handed alpha
Helix 76	AI4	C	43	56	Right-handed alpha
Helix 77	AI5	C	81	93	Right-handed alpha
Helix 78	AI6	C	97	101	Right-handed 310
Helix 79	AI7	C	122	132	Right-handed alpha
Helix 80	AI8	C	142	147	Right-handed alpha
Helix 81	AI9	C	159	169	Right-handed alpha
Helix 82	AJ1	C	190	194	Right-handed 310
Helix 83	AJ2	C	198	211	Right-handed alpha
Helix 84	AJ3	C	223	232	Right-handed alpha
Helix 85	AJ4	C	233	235	Right-handed 310
Helix 86	AJ5	C	239	254	Right-handed alpha
Helix 87	AJ6	C	275	280	Right-handed alpha
Helix 88	AJ7	C	289	294	Right-handed alpha
Helix 89	AJ8	C	304	307	Right-handed 310
Helix 90	AJ9	C	308	315	Right-handed alpha
Helix 91	AK1	C	315	322	Right-handed alpha
Helix 92	AK2	C	365	373	Right-handed alpha
Helix 93	AK3	C	375	382	Right-handed alpha
Helix 94	AK4	C	392	397	Right-handed alpha
Helix 95	AK5	C	406	425	Right-handed alpha
Helix 96	AK6	C	428	432	Right-handed 310
Helix 97	AK7	C	433	441	Right-handed alpha
Helix 98	AK8	C	444	458	Right-handed alpha
Helix 99	AK9	C	461	479	Right-handed alpha
Helix 100	AL1	C	485	495	Right-handed alpha
Helix 101	AL2	D	39	44	Right-handed alpha
Helix 102	AL3	D	44	56	Right-handed alpha
Helix 103	AL4	D	81	93	Right-handed alpha
Helix 104	AL5	D	97	102	Right-handed 310
Helix 105	AL6	D	122	133	Right-handed alpha
Helix 106	AL7	D	142	147	Right-handed alpha
Helix 107	AL8	D	159	170	Right-handed alpha
Helix 108	AL9	D	190	194	Right-handed 310
Helix 109	AM1	D	198	211	Right-handed alpha
Helix 110	AM2	D	223	231	Right-handed alpha
Helix 111	AM3	D	232	235	Right-handed 310
Helix 112	AM4	D	239	254	Right-handed alpha
Helix 113	AM5	D	275	280	Right-handed alpha
Helix 114	AM6	D	289	294	Right-handed alpha
Helix 115	AM7	D	308	314	Right-handed alpha
Helix 116	AM8	D	315	322	Right-handed alpha
Helix 117	AM9	D	364	366	Right-handed 310
Helix 118	AN1	D	367	373	Right-handed alpha
Helix 119	AN2	D	375	380	Right-handed alpha
Helix 120	AN3	D	399	403	Right-handed 310
Helix 121	AN4	D	406	425	Right-handed alpha
Helix 122	AN5	D	428	432	Right-handed 310
Helix 123	AN6	D	433	441	Right-handed alpha
Helix 124	AN7	D	446	458	Right-handed alpha
Helix 125	AN8	D	461	479	Right-handed alpha
Helix 126	AN9	D	485	493	Right-handed alpha
Helix 127	AO1	E	39	44	Right-handed alpha
Helix 128	AO2	E	44	56	Right-handed alpha
Helix 129	AO3	E	81	93	Right-handed alpha
Helix 130	AO4	E	97	102	Right-handed 310
Helix 131	AO5	E	122	132	Right-handed alpha
Helix 132	AO6	E	142	148	Right-handed alpha
Helix 133	AO7	E	159	169	Right-handed alpha
Helix 134	AO8	E	190	194	Right-handed 310
Helix 135	AO9	E	198	211	Right-handed alpha
Helix 136	AP1	E	223	232	Right-handed alpha
Helix 137	AP2	E	239	254	Right-handed alpha
Helix 138	AP3	E	275	280	Right-handed alpha
Helix 139	AP4	E	304	307	Right-handed 310
Helix 140	AP5	E	308	315	Right-handed alpha
Helix 141	AP6	E	317	322	Right-handed alpha
Helix 142	AP7	E	365	372	Right-handed alpha
Helix 143	AP8	E	375	380	Right-handed alpha
Helix 144	AP9	E	392	398	Right-handed alpha
Helix 145	AQ1	E	405	425	Right-handed alpha
Helix 146	AQ2	E	428	432	Right-handed 310
Helix 147	AQ3	E	433	440	Right-handed alpha
Helix 148	AQ4	E	444	454	Right-handed alpha
Helix 149	AQ5	E	463	479	Right-handed alpha
Helix 150	AQ6	E	485	496	Right-handed alpha

There are 28 sheets in PDB entry 8RXD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	3	12	first strand
Strand 2	F	15	26	anti-parallel
Strand 3	F	64	70	anti-parallel
Strand 4	F	32	35	parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	104	107	first strand
Strand 2	F	135	139	parallel
Strand 3	F	154	157	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	217	218	first strand
Strand 2	F	387	388	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	297	301	first strand
Strand 2	F	339	343	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	323	324	first strand
Strand 2	F	335	336	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	327	328	first strand
Strand 2	F	331	332	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	3	12	first strand
Strand 2	A	15	26	anti-parallel
Strand 3	A	64	70	anti-parallel
Strand 4	A	31	35	parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	104	107	first strand
Strand 2	A	135	139	parallel
Strand 3	A	154	157	parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	298	301	first strand
Strand 2	A	340	345	parallel
Strand 3	A	214	217	parallel
Strand 4	A	384	387	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	323	324	first strand
Strand 2	A	335	336	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	3	11	first strand
Strand 2	B	16	26	anti-parallel
Strand 3	B	64	69	anti-parallel
Strand 4	B	32	35	parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	104	106	first strand
Strand 2	B	135	139	parallel
Strand 3	B	154	157	parallel
Strand 4	B	174	175	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	109	110	first strand
Strand 2	B	116	117	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	267	268	first strand
Strand 2	B	298	301	parallel
Strand 3	B	340	345	parallel
Strand 4	B	214	218	parallel
Strand 5	B	384	388	parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	323	327	first strand
Strand 2	B	332	336	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	3	11	first strand
Strand 2	C	16	26	anti-parallel
Strand 3	C	64	69	anti-parallel
Strand 4	C	31	35	parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	104	106	first strand
Strand 2	C	135	139	parallel
Strand 3	C	154	157	parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	109	110	first strand
Strand 2	C	116	117	anti-parallel

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There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	267	268	first strand
Strand 2	C	298	302	parallel
Strand 3	C	340	345	parallel
Strand 4	C	214	218	parallel
Strand 5	C	384	388	parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	323	325	first strand
Strand 2	C	334	336	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	3	12	first strand
Strand 2	D	15	26	anti-parallel
Strand 3	D	64	69	anti-parallel
Strand 4	D	31	35	parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	104	106	first strand
Strand 2	D	135	139	parallel
Strand 3	D	155	157	parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	109	110	first strand
Strand 2	D	116	117	anti-parallel

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There are 5 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	267	268	first strand
Strand 2	D	298	302	parallel
Strand 3	D	340	345	parallel
Strand 4	D	214	218	parallel
Strand 5	D	384	388	parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	323	326	first strand
Strand 2	D	333	336	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	3	11	first strand
Strand 2	E	16	26	anti-parallel
Strand 3	E	64	70	anti-parallel
Strand 4	E	31	35	parallel

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There are 3 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	104	107	first strand
Strand 2	E	135	139	parallel
Strand 3	E	156	157	parallel

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There are 5 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	267	268	first strand
Strand 2	E	297	302	parallel
Strand 3	E	339	345	parallel
Strand 4	E	214	217	parallel
Strand 5	E	384	385	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8RXD

Analysis of interatomic Contacts of Structural Units in PDB entry:
8RXD