Analysis of interatomic Contacts of Structural Units in PDB entry:
8RY0

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8RY0 entry

There are 8 chains in PDB entry 8RY0 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	VAL 2	PRO 474
B	VAL 2	PRO 474
C	VAL 2	PRO 474
D	VAL 2	PRO 474
E	VAL 2	PRO 474
F	VAL 2	PRO 474
G	VAL 2	PRO 474
H	VAL 2	PRO 474

There are160 helices in PDB entry 8RY0. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	15	17	Right-handed 310
Helix 2	AA2	A	30	34	Right-handed 310
Helix 3	AA3	A	58	69	Right-handed alpha
Helix 4	AA4	A	79	92	Right-handed alpha
Helix 5	AA5	A	108	117	Right-handed alpha
Helix 6	AA6	A	137	142	Right-handed alpha
Helix 7	AA7	A	149	153	Right-handed 310
Helix 8	AA8	A	166	174	Right-handed alpha
Helix 9	AA9	A	197	206	Right-handed alpha
Helix 10	AB1	A	227	239	Right-handed alpha
Helix 11	AB2	A	252	266	Right-handed alpha
Helix 12	AB3	A	278	288	Right-handed alpha
Helix 13	AB4	A	304	310	Right-handed alpha
Helix 14	AB5	A	314	330	Right-handed alpha
Helix 15	AB6	A	341	352	Right-handed alpha
Helix 16	AB7	A	387	392	Right-handed 310
Helix 17	AB8	A	402	412	Right-handed alpha
Helix 18	AB9	A	428	448	Right-handed alpha
Helix 19	AC1	A	451	459	Right-handed alpha
Helix 20	AC2	A	466	471	Right-handed 310
Helix 21	AC3	B	15	17	Right-handed 310
Helix 22	AC4	B	30	34	Right-handed 310
Helix 23	AC5	B	58	69	Right-handed alpha
Helix 24	AC6	B	79	92	Right-handed alpha
Helix 25	AC7	B	108	117	Right-handed alpha
Helix 26	AC8	B	137	142	Right-handed alpha
Helix 27	AC9	B	149	153	Right-handed 310
Helix 28	AD1	B	166	174	Right-handed alpha
Helix 29	AD2	B	197	206	Right-handed alpha
Helix 30	AD3	B	227	239	Right-handed alpha
Helix 31	AD4	B	252	266	Right-handed alpha
Helix 32	AD5	B	278	288	Right-handed alpha
Helix 33	AD6	B	304	310	Right-handed alpha
Helix 34	AD7	B	314	330	Right-handed alpha
Helix 35	AD8	B	341	352	Right-handed alpha
Helix 36	AD9	B	387	392	Right-handed 310
Helix 37	AE1	B	402	412	Right-handed alpha
Helix 38	AE2	B	428	448	Right-handed alpha
Helix 39	AE3	B	451	459	Right-handed alpha
Helix 40	AE4	B	466	471	Right-handed 310
Helix 41	AE5	C	15	17	Right-handed 310
Helix 42	AE6	C	30	34	Right-handed 310
Helix 43	AE7	C	58	69	Right-handed alpha
Helix 44	AE8	C	79	92	Right-handed alpha
Helix 45	AE9	C	108	117	Right-handed alpha
Helix 46	AF1	C	137	142	Right-handed alpha
Helix 47	AF2	C	149	153	Right-handed 310
Helix 48	AF3	C	166	174	Right-handed alpha
Helix 49	AF4	C	197	206	Right-handed alpha
Helix 50	AF5	C	227	239	Right-handed alpha
Helix 51	AF6	C	252	266	Right-handed alpha
Helix 52	AF7	C	278	288	Right-handed alpha
Helix 53	AF8	C	304	310	Right-handed alpha
Helix 54	AF9	C	314	330	Right-handed alpha
Helix 55	AG1	C	341	352	Right-handed alpha
Helix 56	AG2	C	387	392	Right-handed 310
Helix 57	AG3	C	402	412	Right-handed alpha
Helix 58	AG4	C	428	448	Right-handed alpha
Helix 59	AG5	C	451	459	Right-handed alpha
Helix 60	AG6	C	466	471	Right-handed 310
Helix 61	AG7	D	15	17	Right-handed 310
Helix 62	AG8	D	30	34	Right-handed 310
Helix 63	AG9	D	58	69	Right-handed alpha
Helix 64	AH1	D	79	92	Right-handed alpha
Helix 65	AH2	D	108	117	Right-handed alpha
Helix 66	AH3	D	137	142	Right-handed alpha
Helix 67	AH4	D	149	153	Right-handed 310
Helix 68	AH5	D	166	174	Right-handed alpha
Helix 69	AH6	D	197	206	Right-handed alpha
Helix 70	AH7	D	227	239	Right-handed alpha
Helix 71	AH8	D	252	266	Right-handed alpha
Helix 72	AH9	D	278	288	Right-handed alpha
Helix 73	AI1	D	304	310	Right-handed alpha
Helix 74	AI2	D	314	330	Right-handed alpha
Helix 75	AI3	D	341	352	Right-handed alpha
Helix 76	AI4	D	387	392	Right-handed 310
Helix 77	AI5	D	402	412	Right-handed alpha
Helix 78	AI6	D	428	448	Right-handed alpha
Helix 79	AI7	D	451	459	Right-handed alpha
Helix 80	AI8	D	466	471	Right-handed 310
Helix 81	AI9	E	15	17	Right-handed 310
Helix 82	AJ1	E	30	34	Right-handed 310
Helix 83	AJ2	E	58	69	Right-handed alpha
Helix 84	AJ3	E	79	92	Right-handed alpha
Helix 85	AJ4	E	108	117	Right-handed alpha
Helix 86	AJ5	E	137	142	Right-handed alpha
Helix 87	AJ6	E	149	153	Right-handed 310
Helix 88	AJ7	E	166	174	Right-handed alpha
Helix 89	AJ8	E	197	206	Right-handed alpha
Helix 90	AJ9	E	227	239	Right-handed alpha
Helix 91	AK1	E	252	266	Right-handed alpha
Helix 92	AK2	E	278	288	Right-handed alpha
Helix 93	AK3	E	304	310	Right-handed alpha
Helix 94	AK4	E	314	330	Right-handed alpha
Helix 95	AK5	E	341	352	Right-handed alpha
Helix 96	AK6	E	387	392	Right-handed 310
Helix 97	AK7	E	402	412	Right-handed alpha
Helix 98	AK8	E	428	448	Right-handed alpha
Helix 99	AK9	E	451	459	Right-handed alpha
Helix 100	AL1	E	466	471	Right-handed 310
Helix 101	AL2	F	15	17	Right-handed 310
Helix 102	AL3	F	30	34	Right-handed 310
Helix 103	AL4	F	58	69	Right-handed alpha
Helix 104	AL5	F	79	92	Right-handed alpha
Helix 105	AL6	F	108	117	Right-handed alpha
Helix 106	AL7	F	137	142	Right-handed alpha
Helix 107	AL8	F	149	153	Right-handed 310
Helix 108	AL9	F	166	174	Right-handed alpha
Helix 109	AM1	F	197	206	Right-handed alpha
Helix 110	AM2	F	227	239	Right-handed alpha
Helix 111	AM3	F	252	266	Right-handed alpha
Helix 112	AM4	F	278	288	Right-handed alpha
Helix 113	AM5	F	304	310	Right-handed alpha
Helix 114	AM6	F	314	330	Right-handed alpha
Helix 115	AM7	F	341	352	Right-handed alpha
Helix 116	AM8	F	387	392	Right-handed 310
Helix 117	AM9	F	402	412	Right-handed alpha
Helix 118	AN1	F	428	448	Right-handed alpha
Helix 119	AN2	F	451	459	Right-handed alpha
Helix 120	AN3	F	466	471	Right-handed 310
Helix 121	AN4	G	15	17	Right-handed 310
Helix 122	AN5	G	30	34	Right-handed 310
Helix 123	AN6	G	58	69	Right-handed alpha
Helix 124	AN7	G	79	92	Right-handed alpha
Helix 125	AN8	G	108	117	Right-handed alpha
Helix 126	AN9	G	137	142	Right-handed alpha
Helix 127	AO1	G	149	153	Right-handed 310
Helix 128	AO2	G	166	174	Right-handed alpha
Helix 129	AO3	G	197	206	Right-handed alpha
Helix 130	AO4	G	227	239	Right-handed alpha
Helix 131	AO5	G	252	266	Right-handed alpha
Helix 132	AO6	G	278	288	Right-handed alpha
Helix 133	AO7	G	304	310	Right-handed alpha
Helix 134	AO8	G	314	330	Right-handed alpha
Helix 135	AO9	G	341	352	Right-handed alpha
Helix 136	AP1	G	387	392	Right-handed 310
Helix 137	AP2	G	402	412	Right-handed alpha
Helix 138	AP3	G	428	448	Right-handed alpha
Helix 139	AP4	G	451	459	Right-handed alpha
Helix 140	AP5	G	466	471	Right-handed 310
Helix 141	AP6	H	15	17	Right-handed 310
Helix 142	AP7	H	30	34	Right-handed 310
Helix 143	AP8	H	58	69	Right-handed alpha
Helix 144	AP9	H	79	92	Right-handed alpha
Helix 145	AQ1	H	108	117	Right-handed alpha
Helix 146	AQ2	H	137	142	Right-handed alpha
Helix 147	AQ3	H	149	153	Right-handed 310
Helix 148	AQ4	H	166	174	Right-handed alpha
Helix 149	AQ5	H	197	206	Right-handed alpha
Helix 150	AQ6	H	227	239	Right-handed alpha
Helix 151	AQ7	H	252	266	Right-handed alpha
Helix 152	AQ8	H	278	288	Right-handed alpha
Helix 153	AQ9	H	304	310	Right-handed alpha
Helix 154	AR1	H	314	330	Right-handed alpha
Helix 155	AR2	H	341	352	Right-handed alpha
Helix 156	AR3	H	387	392	Right-handed 310
Helix 157	AR4	H	402	412	Right-handed alpha
Helix 158	AR5	H	428	448	Right-handed alpha
Helix 159	AR6	H	451	459	Right-handed alpha
Helix 160	AR7	H	466	471	Right-handed 310

There are 40 sheets in PDB entry 8RY0. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	3	4	first strand
Strand 2	A	460	463	parallel
Strand 3	A	19	22	anti-parallel

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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	73	74	first strand
Strand 2	A	219	222	parallel
Strand 3	A	242	246	parallel
Strand 4	A	271	274	parallel
Strand 5	A	292	295	parallel
Strand 6	A	332	336	parallel
Strand 7	A	355	357	parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	102	103	first strand
Strand 2	A	124	128	parallel
Strand 3	A	131	136	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	159	162	first strand
Strand 2	A	181	185	parallel
Strand 3	A	191	196	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	373	374	first strand
Strand 2	A	380	385	anti-parallel
Strand 3	A	417	421	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	3	4	first strand
Strand 2	B	460	463	parallel
Strand 3	B	19	22	anti-parallel

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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	73	74	first strand
Strand 2	B	219	222	parallel
Strand 3	B	242	246	parallel
Strand 4	B	271	274	parallel
Strand 5	B	292	295	parallel
Strand 6	B	332	336	parallel
Strand 7	B	355	357	parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	102	103	first strand
Strand 2	B	124	128	parallel
Strand 3	B	131	136	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	159	162	first strand
Strand 2	B	181	185	parallel
Strand 3	B	191	196	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	373	374	first strand
Strand 2	B	380	385	anti-parallel
Strand 3	B	417	421	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	3	4	first strand
Strand 2	C	460	463	parallel
Strand 3	C	19	22	anti-parallel

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There are 7 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	73	74	first strand
Strand 2	C	219	222	parallel
Strand 3	C	242	246	parallel
Strand 4	C	271	274	parallel
Strand 5	C	292	295	parallel
Strand 6	C	332	336	parallel
Strand 7	C	355	357	parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	102	103	first strand
Strand 2	C	124	128	parallel
Strand 3	C	131	136	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	159	162	first strand
Strand 2	C	181	185	parallel
Strand 3	C	191	196	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	373	374	first strand
Strand 2	C	380	385	anti-parallel
Strand 3	C	417	421	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	3	4	first strand
Strand 2	D	460	463	parallel
Strand 3	D	19	22	anti-parallel

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There are 7 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	73	74	first strand
Strand 2	D	219	222	parallel
Strand 3	D	242	246	parallel
Strand 4	D	271	274	parallel
Strand 5	D	292	295	parallel
Strand 6	D	332	336	parallel
Strand 7	D	355	357	parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	102	103	first strand
Strand 2	D	124	128	parallel
Strand 3	D	131	136	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	159	162	first strand
Strand 2	D	181	185	parallel
Strand 3	D	191	196	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	373	374	first strand
Strand 2	D	380	385	anti-parallel
Strand 3	D	417	421	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	3	4	first strand
Strand 2	E	460	463	parallel
Strand 3	E	19	22	anti-parallel

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There are 7 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	73	74	first strand
Strand 2	E	219	222	parallel
Strand 3	E	242	246	parallel
Strand 4	E	271	274	parallel
Strand 5	E	292	295	parallel
Strand 6	E	332	336	parallel
Strand 7	E	355	357	parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	102	103	first strand
Strand 2	E	124	128	parallel
Strand 3	E	131	136	anti-parallel

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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	159	162	first strand
Strand 2	E	181	185	parallel
Strand 3	E	191	196	anti-parallel

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There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	373	374	first strand
Strand 2	E	380	385	anti-parallel
Strand 3	E	417	421	anti-parallel

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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	3	4	first strand
Strand 2	F	460	463	parallel
Strand 3	F	19	22	anti-parallel

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There are 7 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	73	74	first strand
Strand 2	F	219	222	parallel
Strand 3	F	242	246	parallel
Strand 4	F	271	274	parallel
Strand 5	F	292	295	parallel
Strand 6	F	332	336	parallel
Strand 7	F	355	357	parallel

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There are 3 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	102	103	first strand
Strand 2	F	124	128	parallel
Strand 3	F	131	136	anti-parallel

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There are 3 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	159	162	first strand
Strand 2	F	181	185	parallel
Strand 3	F	191	196	anti-parallel

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There are 3 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	373	374	first strand
Strand 2	F	380	385	anti-parallel
Strand 3	F	417	421	anti-parallel

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There are 3 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	3	4	first strand
Strand 2	G	460	463	parallel
Strand 3	G	19	22	anti-parallel

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There are 7 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	73	74	first strand
Strand 2	G	219	222	parallel
Strand 3	G	242	246	parallel
Strand 4	G	271	274	parallel
Strand 5	G	292	295	parallel
Strand 6	G	332	336	parallel
Strand 7	G	355	357	parallel

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There are 3 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	102	103	first strand
Strand 2	G	124	128	parallel
Strand 3	G	131	136	anti-parallel

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There are 3 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	159	162	first strand
Strand 2	G	181	185	parallel
Strand 3	G	191	196	anti-parallel

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There are 3 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	373	374	first strand
Strand 2	G	380	385	anti-parallel
Strand 3	G	417	421	anti-parallel

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There are 3 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	3	4	first strand
Strand 2	H	460	463	parallel
Strand 3	H	19	22	anti-parallel

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There are 7 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	73	74	first strand
Strand 2	H	219	222	parallel
Strand 3	H	242	246	parallel
Strand 4	H	271	274	parallel
Strand 5	H	292	295	parallel
Strand 6	H	332	336	parallel
Strand 7	H	355	357	parallel

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There are 3 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	102	103	first strand
Strand 2	H	124	128	parallel
Strand 3	H	131	136	anti-parallel

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There are 3 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	159	162	first strand
Strand 2	H	181	185	parallel
Strand 3	H	191	196	anti-parallel

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There are 3 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	373	374	first strand
Strand 2	H	380	385	anti-parallel
Strand 3	H	417	421	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8RY0

Analysis of interatomic Contacts of Structural Units in PDB entry:
8RY0