Analysis of interatomic Contacts of Structural Units in PDB entry:
8RY2

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8RY2 entry

There are 4 chains in PDB entry 8RY2 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 1	LYS 222
B	ILE 2	GLU 354
H	GLU 1	PRO 221
L	ILE 2	CYS 355

There are 28 helices in PDB entry 8RY2. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	28	32	Right-handed 310
Helix 2	AA2	A	74	76	Right-handed 310
Helix 3	AA3	A	87	91	Right-handed 310
Helix 4	AA4	A	195	199	Right-handed 310
Helix 5	AA5	B	39	55	Right-handed alpha
Helix 6	AA6	B	71	90	Right-handed alpha
Helix 7	AA7	B	95	119	Right-handed alpha
Helix 8	AA8	B	125	130	Right-handed alpha
Helix 9	AA9	B	142	145	Right-handed 310
Helix 10	AB1	B	146	152	Right-handed alpha
Helix 11	AB2	B	152	161	Right-handed alpha
Helix 12	AB3	B	220	224	Right-handed 310
Helix 13	AB4	B	262	268	Right-handed alpha
Helix 14	AB5	B	324	329	Right-handed alpha
Helix 15	AB6	H	28	32	Right-handed 310
Helix 16	AB7	H	74	76	Right-handed 310
Helix 17	AB8	H	87	91	Right-handed 310
Helix 18	AB9	H	195	199	Right-handed 310
Helix 19	AC1	L	41	55	Right-handed alpha
Helix 20	AC2	L	71	90	Right-handed alpha
Helix 21	AC3	L	95	119	Right-handed alpha
Helix 22	AC4	L	125	130	Right-handed alpha
Helix 23	AC5	L	142	145	Right-handed 310
Helix 24	AC6	L	146	151	Right-handed alpha
Helix 25	AC7	L	152	161	Right-handed alpha
Helix 26	AC8	L	220	224	Right-handed 310
Helix 27	AC9	L	262	268	Right-handed alpha
Helix 28	AD1	L	324	329	Right-handed alpha

There are 24 sheets in PDB entry 8RY2. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	3	6	first strand
Strand 2	A	18	25	anti-parallel
Strand 3	A	78	83	anti-parallel
Strand 4	A	68	73	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	10	12	first strand
Strand 2	A	115	119	parallel
Strand 3	A	92	100	anti-parallel
Strand 4	A	34	39	anti-parallel
Strand 5	A	45	51	anti-parallel
Strand 6	A	58	60	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	10	12	first strand
Strand 2	A	115	119	parallel
Strand 3	A	92	100	anti-parallel
Strand 4	A	107	111	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	128	132	first strand
Strand 2	A	143	153	anti-parallel
Strand 3	A	184	193	anti-parallel
Strand 4	A	171	173	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	128	132	first strand
Strand 2	A	143	153	anti-parallel
Strand 3	A	184	193	anti-parallel
Strand 4	A	177	178	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	159	162	first strand
Strand 2	A	202	208	anti-parallel
Strand 3	A	213	219	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	4	7	first strand
Strand 2	B	19	25	anti-parallel
Strand 3	B	211	216	anti-parallel
Strand 4	B	203	208	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	10	13	first strand
Strand 2	B	243	247	parallel
Strand 3	B	226	231	anti-parallel
Strand 4	B	174	179	anti-parallel
Strand 5	B	186	190	anti-parallel
Strand 6	B	194	195	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	10	13	first strand
Strand 2	B	243	247	parallel
Strand 3	B	226	231	anti-parallel
Strand 4	B	238	239	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	30	31	first strand
Strand 2	B	171	172	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	255	259	first strand
Strand 2	B	270	280	anti-parallel
Strand 3	B	314	323	anti-parallel
Strand 4	B	300	304	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	294	295	first strand
Strand 2	B	286	291	anti-parallel
Strand 3	B	332	338	anti-parallel
Strand 4	B	346	351	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	3	6	first strand
Strand 2	H	18	25	anti-parallel
Strand 3	H	78	83	anti-parallel
Strand 4	H	68	73	anti-parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	10	12	first strand
Strand 2	H	115	119	parallel
Strand 3	H	92	100	anti-parallel
Strand 4	H	34	39	anti-parallel
Strand 5	H	45	51	anti-parallel
Strand 6	H	58	60	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	10	12	first strand
Strand 2	H	115	119	parallel
Strand 3	H	92	100	anti-parallel
Strand 4	H	107	111	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	128	132	first strand
Strand 2	H	143	153	anti-parallel
Strand 3	H	184	193	anti-parallel
Strand 4	H	171	173	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	128	132	first strand
Strand 2	H	143	153	anti-parallel
Strand 3	H	184	193	anti-parallel
Strand 4	H	177	178	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	159	162	first strand
Strand 2	H	202	208	anti-parallel
Strand 3	H	213	219	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	4	7	first strand
Strand 2	L	19	25	anti-parallel
Strand 3	L	211	216	anti-parallel
Strand 4	L	203	208	anti-parallel

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There are 6 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	10	13	first strand
Strand 2	L	243	247	parallel
Strand 3	L	226	231	anti-parallel
Strand 4	L	174	179	anti-parallel
Strand 5	L	186	190	anti-parallel
Strand 6	L	194	195	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	10	13	first strand
Strand 2	L	243	247	parallel
Strand 3	L	226	231	anti-parallel
Strand 4	L	238	239	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	30	31	first strand
Strand 2	L	171	172	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	255	259	first strand
Strand 2	L	270	280	anti-parallel
Strand 3	L	314	323	anti-parallel
Strand 4	L	300	304	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	294	295	first strand
Strand 2	L	286	291	anti-parallel
Strand 3	L	332	338	anti-parallel
Strand 4	L	346	351	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8RY2

Analysis of interatomic Contacts of Structural Units in PDB entry:
8RY2