Analysis of interatomic Contacts of Structural Units in PDB entry:
8RY7

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8RY7 entry

There are 8 chains in PDB entry 8RY7 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	VAL 2	ALA 470
B	VAL 2	ALA 470
C	VAL 2	ALA 470
D	VAL 2	ALA 470
E	VAL 2	ALA 470
F	VAL 2	ALA 470
G	VAL 2	ALA 470
H	VAL 2	ALA 470

There are160 helices in PDB entry 8RY7. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	15	17	Right-handed 310
Helix 2	AA2	A	30	34	Right-handed 310
Helix 3	AA3	A	58	68	Right-handed alpha
Helix 4	AA4	A	79	92	Right-handed alpha
Helix 5	AA5	A	108	117	Right-handed alpha
Helix 6	AA6	A	149	154	Right-handed alpha
Helix 7	AA7	A	166	174	Right-handed alpha
Helix 8	AA8	A	196	204	Right-handed alpha
Helix 9	AA9	A	227	238	Right-handed alpha
Helix 10	AB1	A	252	266	Right-handed alpha
Helix 11	AB2	A	278	289	Right-handed alpha
Helix 12	AB3	A	303	309	Right-handed alpha
Helix 13	AB4	A	314	330	Right-handed alpha
Helix 14	AB5	A	341	352	Right-handed alpha
Helix 15	AB6	A	359	364	Right-handed 310
Helix 16	AB7	A	389	397	Right-handed alpha
Helix 17	AB8	A	401	412	Right-handed alpha
Helix 18	AB9	A	429	448	Right-handed alpha
Helix 19	AC1	A	451	458	Right-handed alpha
Helix 20	AC2	A	465	470	Right-handed 310
Helix 21	AC3	B	15	17	Right-handed 310
Helix 22	AC4	B	30	34	Right-handed 310
Helix 23	AC5	B	58	68	Right-handed alpha
Helix 24	AC6	B	79	92	Right-handed alpha
Helix 25	AC7	B	108	117	Right-handed alpha
Helix 26	AC8	B	149	154	Right-handed alpha
Helix 27	AC9	B	166	174	Right-handed alpha
Helix 28	AD1	B	196	204	Right-handed alpha
Helix 29	AD2	B	227	238	Right-handed alpha
Helix 30	AD3	B	252	266	Right-handed alpha
Helix 31	AD4	B	278	289	Right-handed alpha
Helix 32	AD5	B	303	309	Right-handed alpha
Helix 33	AD6	B	314	330	Right-handed alpha
Helix 34	AD7	B	341	352	Right-handed alpha
Helix 35	AD8	B	359	364	Right-handed 310
Helix 36	AD9	B	389	397	Right-handed alpha
Helix 37	AE1	B	401	412	Right-handed alpha
Helix 38	AE2	B	429	448	Right-handed alpha
Helix 39	AE3	B	451	458	Right-handed alpha
Helix 40	AE4	B	465	470	Right-handed 310
Helix 41	AE5	C	15	17	Right-handed 310
Helix 42	AE6	C	30	34	Right-handed 310
Helix 43	AE7	C	58	68	Right-handed alpha
Helix 44	AE8	C	79	92	Right-handed alpha
Helix 45	AE9	C	108	117	Right-handed alpha
Helix 46	AF1	C	149	154	Right-handed alpha
Helix 47	AF2	C	166	174	Right-handed alpha
Helix 48	AF3	C	196	204	Right-handed alpha
Helix 49	AF4	C	227	238	Right-handed alpha
Helix 50	AF5	C	252	266	Right-handed alpha
Helix 51	AF6	C	278	289	Right-handed alpha
Helix 52	AF7	C	303	309	Right-handed alpha
Helix 53	AF8	C	314	330	Right-handed alpha
Helix 54	AF9	C	341	352	Right-handed alpha
Helix 55	AG1	C	359	364	Right-handed 310
Helix 56	AG2	C	389	397	Right-handed alpha
Helix 57	AG3	C	401	412	Right-handed alpha
Helix 58	AG4	C	429	448	Right-handed alpha
Helix 59	AG5	C	451	458	Right-handed alpha
Helix 60	AG6	C	465	470	Right-handed 310
Helix 61	AG7	D	15	17	Right-handed 310
Helix 62	AG8	D	30	34	Right-handed 310
Helix 63	AG9	D	58	68	Right-handed alpha
Helix 64	AH1	D	79	92	Right-handed alpha
Helix 65	AH2	D	108	117	Right-handed alpha
Helix 66	AH3	D	149	154	Right-handed alpha
Helix 67	AH4	D	166	174	Right-handed alpha
Helix 68	AH5	D	196	204	Right-handed alpha
Helix 69	AH6	D	227	238	Right-handed alpha
Helix 70	AH7	D	252	266	Right-handed alpha
Helix 71	AH8	D	278	289	Right-handed alpha
Helix 72	AH9	D	303	309	Right-handed alpha
Helix 73	AI1	D	314	330	Right-handed alpha
Helix 74	AI2	D	341	352	Right-handed alpha
Helix 75	AI3	D	359	364	Right-handed 310
Helix 76	AI4	D	389	397	Right-handed alpha
Helix 77	AI5	D	401	412	Right-handed alpha
Helix 78	AI6	D	429	448	Right-handed alpha
Helix 79	AI7	D	451	458	Right-handed alpha
Helix 80	AI8	D	465	470	Right-handed 310
Helix 81	AI9	E	15	17	Right-handed 310
Helix 82	AJ1	E	30	34	Right-handed 310
Helix 83	AJ2	E	58	68	Right-handed alpha
Helix 84	AJ3	E	79	92	Right-handed alpha
Helix 85	AJ4	E	108	117	Right-handed alpha
Helix 86	AJ5	E	149	154	Right-handed alpha
Helix 87	AJ6	E	166	174	Right-handed alpha
Helix 88	AJ7	E	196	204	Right-handed alpha
Helix 89	AJ8	E	227	238	Right-handed alpha
Helix 90	AJ9	E	252	266	Right-handed alpha
Helix 91	AK1	E	278	289	Right-handed alpha
Helix 92	AK2	E	303	309	Right-handed alpha
Helix 93	AK3	E	314	330	Right-handed alpha
Helix 94	AK4	E	341	352	Right-handed alpha
Helix 95	AK5	E	359	364	Right-handed 310
Helix 96	AK6	E	389	397	Right-handed alpha
Helix 97	AK7	E	401	412	Right-handed alpha
Helix 98	AK8	E	429	448	Right-handed alpha
Helix 99	AK9	E	451	458	Right-handed alpha
Helix 100	AL1	E	465	470	Right-handed 310
Helix 101	AL2	F	15	17	Right-handed 310
Helix 102	AL3	F	30	34	Right-handed 310
Helix 103	AL4	F	58	68	Right-handed alpha
Helix 104	AL5	F	79	92	Right-handed alpha
Helix 105	AL6	F	108	117	Right-handed alpha
Helix 106	AL7	F	149	154	Right-handed alpha
Helix 107	AL8	F	166	174	Right-handed alpha
Helix 108	AL9	F	196	204	Right-handed alpha
Helix 109	AM1	F	227	238	Right-handed alpha
Helix 110	AM2	F	252	266	Right-handed alpha
Helix 111	AM3	F	278	289	Right-handed alpha
Helix 112	AM4	F	303	309	Right-handed alpha
Helix 113	AM5	F	314	330	Right-handed alpha
Helix 114	AM6	F	341	352	Right-handed alpha
Helix 115	AM7	F	359	364	Right-handed 310
Helix 116	AM8	F	389	397	Right-handed alpha
Helix 117	AM9	F	401	412	Right-handed alpha
Helix 118	AN1	F	429	448	Right-handed alpha
Helix 119	AN2	F	451	458	Right-handed alpha
Helix 120	AN3	F	465	470	Right-handed 310
Helix 121	AN4	G	15	17	Right-handed 310
Helix 122	AN5	G	30	34	Right-handed 310
Helix 123	AN6	G	58	68	Right-handed alpha
Helix 124	AN7	G	79	92	Right-handed alpha
Helix 125	AN8	G	108	117	Right-handed alpha
Helix 126	AN9	G	149	154	Right-handed alpha
Helix 127	AO1	G	166	174	Right-handed alpha
Helix 128	AO2	G	196	204	Right-handed alpha
Helix 129	AO3	G	227	238	Right-handed alpha
Helix 130	AO4	G	252	266	Right-handed alpha
Helix 131	AO5	G	278	289	Right-handed alpha
Helix 132	AO6	G	303	309	Right-handed alpha
Helix 133	AO7	G	314	330	Right-handed alpha
Helix 134	AO8	G	341	352	Right-handed alpha
Helix 135	AO9	G	359	364	Right-handed 310
Helix 136	AP1	G	389	397	Right-handed alpha
Helix 137	AP2	G	401	412	Right-handed alpha
Helix 138	AP3	G	429	448	Right-handed alpha
Helix 139	AP4	G	451	458	Right-handed alpha
Helix 140	AP5	G	465	470	Right-handed 310
Helix 141	AP6	H	15	17	Right-handed 310
Helix 142	AP7	H	30	34	Right-handed 310
Helix 143	AP8	H	58	68	Right-handed alpha
Helix 144	AP9	H	79	92	Right-handed alpha
Helix 145	AQ1	H	108	117	Right-handed alpha
Helix 146	AQ2	H	149	154	Right-handed alpha
Helix 147	AQ3	H	166	174	Right-handed alpha
Helix 148	AQ4	H	196	204	Right-handed alpha
Helix 149	AQ5	H	227	238	Right-handed alpha
Helix 150	AQ6	H	252	266	Right-handed alpha
Helix 151	AQ7	H	278	289	Right-handed alpha
Helix 152	AQ8	H	303	309	Right-handed alpha
Helix 153	AQ9	H	314	330	Right-handed alpha
Helix 154	AR1	H	341	352	Right-handed alpha
Helix 155	AR2	H	359	364	Right-handed 310
Helix 156	AR3	H	389	397	Right-handed alpha
Helix 157	AR4	H	401	412	Right-handed alpha
Helix 158	AR5	H	429	448	Right-handed alpha
Helix 159	AR6	H	451	458	Right-handed alpha
Helix 160	AR7	H	465	470	Right-handed 310

There are 40 sheets in PDB entry 8RY7. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	3	4	first strand
Strand 2	A	460	463	parallel
Strand 3	A	19	21	anti-parallel

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There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	49	50	first strand
Strand 2	A	71	74	parallel
Strand 3	A	219	222	parallel
Strand 4	A	242	245	parallel
Strand 5	A	271	276	parallel
Strand 6	A	292	295	parallel
Strand 7	A	332	335	parallel
Strand 8	A	355	358	parallel
Strand 9	A	49	50	parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	102	103	first strand
Strand 2	A	123	128	parallel
Strand 3	A	131	137	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	161	162	first strand
Strand 2	A	184	185	parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	373	374	first strand
Strand 2	A	380	384	anti-parallel
Strand 3	A	418	421	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	3	4	first strand
Strand 2	B	460	463	parallel
Strand 3	B	19	21	anti-parallel

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There are 9 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	49	50	first strand
Strand 2	B	71	74	parallel
Strand 3	B	219	222	parallel
Strand 4	B	242	245	parallel
Strand 5	B	271	276	parallel
Strand 6	B	292	295	parallel
Strand 7	B	332	335	parallel
Strand 8	B	355	358	parallel
Strand 9	B	49	50	parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	102	103	first strand
Strand 2	B	123	128	parallel
Strand 3	B	131	137	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	161	162	first strand
Strand 2	B	184	185	parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	373	374	first strand
Strand 2	B	380	384	anti-parallel
Strand 3	B	418	421	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	3	4	first strand
Strand 2	C	460	463	parallel
Strand 3	C	19	21	anti-parallel

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There are 9 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	49	50	first strand
Strand 2	C	71	74	parallel
Strand 3	C	219	222	parallel
Strand 4	C	242	245	parallel
Strand 5	C	271	276	parallel
Strand 6	C	292	295	parallel
Strand 7	C	332	335	parallel
Strand 8	C	355	358	parallel
Strand 9	C	49	50	parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	102	103	first strand
Strand 2	C	123	128	parallel
Strand 3	C	131	137	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	161	162	first strand
Strand 2	C	184	185	parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	373	374	first strand
Strand 2	C	380	384	anti-parallel
Strand 3	C	418	421	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	3	4	first strand
Strand 2	D	460	463	parallel
Strand 3	D	19	21	anti-parallel

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There are 9 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	49	50	first strand
Strand 2	D	71	74	parallel
Strand 3	D	219	222	parallel
Strand 4	D	242	245	parallel
Strand 5	D	271	276	parallel
Strand 6	D	292	295	parallel
Strand 7	D	332	335	parallel
Strand 8	D	355	358	parallel
Strand 9	D	49	50	parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	102	103	first strand
Strand 2	D	123	128	parallel
Strand 3	D	131	137	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	161	162	first strand
Strand 2	D	184	185	parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	373	374	first strand
Strand 2	D	380	384	anti-parallel
Strand 3	D	418	421	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	3	4	first strand
Strand 2	E	460	463	parallel
Strand 3	E	19	21	anti-parallel

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There are 9 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	49	50	first strand
Strand 2	E	71	74	parallel
Strand 3	E	219	222	parallel
Strand 4	E	242	245	parallel
Strand 5	E	271	276	parallel
Strand 6	E	292	295	parallel
Strand 7	E	332	335	parallel
Strand 8	E	355	358	parallel
Strand 9	E	49	50	parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	102	103	first strand
Strand 2	E	123	128	parallel
Strand 3	E	131	137	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	161	162	first strand
Strand 2	E	184	185	parallel

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There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	373	374	first strand
Strand 2	E	380	384	anti-parallel
Strand 3	E	418	421	anti-parallel

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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	3	4	first strand
Strand 2	F	460	463	parallel
Strand 3	F	19	21	anti-parallel

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There are 9 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	49	50	first strand
Strand 2	F	71	74	parallel
Strand 3	F	219	222	parallel
Strand 4	F	242	245	parallel
Strand 5	F	271	276	parallel
Strand 6	F	292	295	parallel
Strand 7	F	332	335	parallel
Strand 8	F	355	358	parallel
Strand 9	F	49	50	parallel

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There are 3 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	102	103	first strand
Strand 2	F	123	128	parallel
Strand 3	F	131	137	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	161	162	first strand
Strand 2	F	184	185	parallel

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There are 3 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	373	374	first strand
Strand 2	F	380	384	anti-parallel
Strand 3	F	418	421	anti-parallel

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There are 3 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	3	4	first strand
Strand 2	G	460	463	parallel
Strand 3	G	19	21	anti-parallel

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There are 9 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	49	50	first strand
Strand 2	G	71	74	parallel
Strand 3	G	219	222	parallel
Strand 4	G	242	245	parallel
Strand 5	G	271	276	parallel
Strand 6	G	292	295	parallel
Strand 7	G	332	335	parallel
Strand 8	G	355	358	parallel
Strand 9	G	49	50	parallel

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There are 3 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	102	103	first strand
Strand 2	G	123	128	parallel
Strand 3	G	131	137	anti-parallel

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There are 2 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	161	162	first strand
Strand 2	G	184	185	parallel

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There are 3 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	373	374	first strand
Strand 2	G	380	384	anti-parallel
Strand 3	G	418	421	anti-parallel

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There are 3 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	3	4	first strand
Strand 2	H	460	463	parallel
Strand 3	H	19	21	anti-parallel

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There are 9 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	49	50	first strand
Strand 2	H	71	74	parallel
Strand 3	H	219	222	parallel
Strand 4	H	242	245	parallel
Strand 5	H	271	276	parallel
Strand 6	H	292	295	parallel
Strand 7	H	332	335	parallel
Strand 8	H	355	358	parallel
Strand 9	H	49	50	parallel

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There are 3 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	102	103	first strand
Strand 2	H	123	128	parallel
Strand 3	H	131	137	anti-parallel

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There are 2 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	161	162	first strand
Strand 2	H	184	185	parallel

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There are 3 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	373	374	first strand
Strand 2	H	380	384	anti-parallel
Strand 3	H	418	421	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8RY7

Analysis of interatomic Contacts of Structural Units in PDB entry:
8RY7