Analysis of interatomic Contacts of Structural Units in PDB entry:
8RY8

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8RY8 entry

There are 8 chains in PDB entry 8RY8 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	VAL 2	ALA 470
B	VAL 2	ALA 470
C	VAL 2	ALA 470
D	VAL 2	ALA 470
E	VAL 2	ALA 470
F	VAL 2	ALA 470
G	VAL 2	ALA 470
H	VAL 2	ALA 470

There are144 helices in PDB entry 8RY8. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	30	34	Right-handed 310
Helix 2	AA2	A	58	68	Right-handed alpha
Helix 3	AA3	A	79	91	Right-handed alpha
Helix 4	AA4	A	108	117	Right-handed alpha
Helix 5	AA5	A	166	174	Right-handed alpha
Helix 6	AA6	A	196	206	Right-handed alpha
Helix 7	AA7	A	227	239	Right-handed alpha
Helix 8	AA8	A	252	265	Right-handed alpha
Helix 9	AA9	A	278	289	Right-handed alpha
Helix 10	AB1	A	303	309	Right-handed alpha
Helix 11	AB2	A	314	329	Right-handed alpha
Helix 12	AB3	A	341	352	Right-handed alpha
Helix 13	AB4	A	359	364	Right-handed 310
Helix 14	AB5	A	387	397	Right-handed alpha
Helix 15	AB6	A	401	412	Right-handed alpha
Helix 16	AB7	A	428	448	Right-handed alpha
Helix 17	AB8	A	451	459	Right-handed alpha
Helix 18	AB9	A	465	470	Right-handed 310
Helix 19	AC1	B	30	34	Right-handed 310
Helix 20	AC2	B	58	68	Right-handed alpha
Helix 21	AC3	B	79	91	Right-handed alpha
Helix 22	AC4	B	108	117	Right-handed alpha
Helix 23	AC5	B	166	174	Right-handed alpha
Helix 24	AC6	B	196	206	Right-handed alpha
Helix 25	AC7	B	227	239	Right-handed alpha
Helix 26	AC8	B	252	265	Right-handed alpha
Helix 27	AC9	B	278	289	Right-handed alpha
Helix 28	AD1	B	303	309	Right-handed alpha
Helix 29	AD2	B	314	329	Right-handed alpha
Helix 30	AD3	B	341	352	Right-handed alpha
Helix 31	AD4	B	359	364	Right-handed 310
Helix 32	AD5	B	387	397	Right-handed alpha
Helix 33	AD6	B	401	412	Right-handed alpha
Helix 34	AD7	B	428	448	Right-handed alpha
Helix 35	AD8	B	451	459	Right-handed alpha
Helix 36	AD9	B	465	470	Right-handed 310
Helix 37	AE1	C	30	34	Right-handed 310
Helix 38	AE2	C	58	68	Right-handed alpha
Helix 39	AE3	C	79	91	Right-handed alpha
Helix 40	AE4	C	108	117	Right-handed alpha
Helix 41	AE5	C	166	174	Right-handed alpha
Helix 42	AE6	C	196	206	Right-handed alpha
Helix 43	AE7	C	227	239	Right-handed alpha
Helix 44	AE8	C	252	265	Right-handed alpha
Helix 45	AE9	C	278	289	Right-handed alpha
Helix 46	AF1	C	303	309	Right-handed alpha
Helix 47	AF2	C	314	329	Right-handed alpha
Helix 48	AF3	C	341	352	Right-handed alpha
Helix 49	AF4	C	359	364	Right-handed 310
Helix 50	AF5	C	387	397	Right-handed alpha
Helix 51	AF6	C	401	412	Right-handed alpha
Helix 52	AF7	C	428	448	Right-handed alpha
Helix 53	AF8	C	451	459	Right-handed alpha
Helix 54	AF9	C	465	470	Right-handed 310
Helix 55	AG1	D	30	34	Right-handed 310
Helix 56	AG2	D	58	68	Right-handed alpha
Helix 57	AG3	D	79	91	Right-handed alpha
Helix 58	AG4	D	108	117	Right-handed alpha
Helix 59	AG5	D	166	174	Right-handed alpha
Helix 60	AG6	D	196	206	Right-handed alpha
Helix 61	AG7	D	227	239	Right-handed alpha
Helix 62	AG8	D	252	265	Right-handed alpha
Helix 63	AG9	D	278	289	Right-handed alpha
Helix 64	AH1	D	303	309	Right-handed alpha
Helix 65	AH2	D	314	329	Right-handed alpha
Helix 66	AH3	D	341	352	Right-handed alpha
Helix 67	AH4	D	359	364	Right-handed 310
Helix 68	AH5	D	387	397	Right-handed alpha
Helix 69	AH6	D	401	412	Right-handed alpha
Helix 70	AH7	D	428	448	Right-handed alpha
Helix 71	AH8	D	451	459	Right-handed alpha
Helix 72	AH9	D	465	470	Right-handed 310
Helix 73	AI1	E	30	34	Right-handed 310
Helix 74	AI2	E	58	68	Right-handed alpha
Helix 75	AI3	E	79	91	Right-handed alpha
Helix 76	AI4	E	108	117	Right-handed alpha
Helix 77	AI5	E	166	174	Right-handed alpha
Helix 78	AI6	E	196	206	Right-handed alpha
Helix 79	AI7	E	227	239	Right-handed alpha
Helix 80	AI8	E	252	265	Right-handed alpha
Helix 81	AI9	E	278	289	Right-handed alpha
Helix 82	AJ1	E	303	309	Right-handed alpha
Helix 83	AJ2	E	314	329	Right-handed alpha
Helix 84	AJ3	E	341	352	Right-handed alpha
Helix 85	AJ4	E	359	364	Right-handed 310
Helix 86	AJ5	E	387	397	Right-handed alpha
Helix 87	AJ6	E	401	412	Right-handed alpha
Helix 88	AJ7	E	428	448	Right-handed alpha
Helix 89	AJ8	E	451	459	Right-handed alpha
Helix 90	AJ9	E	465	470	Right-handed 310
Helix 91	AK1	F	30	34	Right-handed 310
Helix 92	AK2	F	58	68	Right-handed alpha
Helix 93	AK3	F	79	91	Right-handed alpha
Helix 94	AK4	F	108	117	Right-handed alpha
Helix 95	AK5	F	166	174	Right-handed alpha
Helix 96	AK6	F	196	206	Right-handed alpha
Helix 97	AK7	F	227	239	Right-handed alpha
Helix 98	AK8	F	252	265	Right-handed alpha
Helix 99	AK9	F	278	289	Right-handed alpha
Helix 100	AL1	F	303	309	Right-handed alpha
Helix 101	AL2	F	314	329	Right-handed alpha
Helix 102	AL3	F	341	352	Right-handed alpha
Helix 103	AL4	F	359	364	Right-handed 310
Helix 104	AL5	F	387	397	Right-handed alpha
Helix 105	AL6	F	401	412	Right-handed alpha
Helix 106	AL7	F	428	448	Right-handed alpha
Helix 107	AL8	F	451	459	Right-handed alpha
Helix 108	AL9	F	465	470	Right-handed 310
Helix 109	AM1	G	30	34	Right-handed 310
Helix 110	AM2	G	58	68	Right-handed alpha
Helix 111	AM3	G	79	91	Right-handed alpha
Helix 112	AM4	G	108	117	Right-handed alpha
Helix 113	AM5	G	166	174	Right-handed alpha
Helix 114	AM6	G	196	206	Right-handed alpha
Helix 115	AM7	G	227	239	Right-handed alpha
Helix 116	AM8	G	252	265	Right-handed alpha
Helix 117	AM9	G	278	289	Right-handed alpha
Helix 118	AN1	G	303	309	Right-handed alpha
Helix 119	AN2	G	314	329	Right-handed alpha
Helix 120	AN3	G	341	352	Right-handed alpha
Helix 121	AN4	G	359	364	Right-handed 310
Helix 122	AN5	G	387	397	Right-handed alpha
Helix 123	AN6	G	401	412	Right-handed alpha
Helix 124	AN7	G	428	448	Right-handed alpha
Helix 125	AN8	G	451	459	Right-handed alpha
Helix 126	AN9	G	465	470	Right-handed 310
Helix 127	AO1	H	30	34	Right-handed 310
Helix 128	AO2	H	58	68	Right-handed alpha
Helix 129	AO3	H	79	91	Right-handed alpha
Helix 130	AO4	H	108	117	Right-handed alpha
Helix 131	AO5	H	166	174	Right-handed alpha
Helix 132	AO6	H	196	206	Right-handed alpha
Helix 133	AO7	H	227	239	Right-handed alpha
Helix 134	AO8	H	252	265	Right-handed alpha
Helix 135	AO9	H	278	289	Right-handed alpha
Helix 136	AP1	H	303	309	Right-handed alpha
Helix 137	AP2	H	314	329	Right-handed alpha
Helix 138	AP3	H	341	352	Right-handed alpha
Helix 139	AP4	H	359	364	Right-handed 310
Helix 140	AP5	H	387	397	Right-handed alpha
Helix 141	AP6	H	401	412	Right-handed alpha
Helix 142	AP7	H	428	448	Right-handed alpha
Helix 143	AP8	H	451	459	Right-handed alpha
Helix 144	AP9	H	465	470	Right-handed 310

There are 40 sheets in PDB entry 8RY8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	3	4	first strand
Strand 2	A	460	463	parallel
Strand 3	A	19	21	anti-parallel

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There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	48	50	first strand
Strand 2	A	71	74	parallel
Strand 3	A	219	222	parallel
Strand 4	A	243	245	parallel
Strand 5	A	271	276	parallel
Strand 6	A	292	295	parallel
Strand 7	A	332	335	parallel
Strand 8	A	355	358	parallel
Strand 9	A	48	50	parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	102	103	first strand
Strand 2	A	124	128	parallel
Strand 3	A	131	136	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	159	162	first strand
Strand 2	A	182	185	parallel
Strand 3	A	191	195	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	373	374	first strand
Strand 2	A	380	383	anti-parallel
Strand 3	A	419	421	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	3	4	first strand
Strand 2	B	460	463	parallel
Strand 3	B	19	21	anti-parallel

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There are 9 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	48	50	first strand
Strand 2	B	71	74	parallel
Strand 3	B	219	222	parallel
Strand 4	B	243	245	parallel
Strand 5	B	271	276	parallel
Strand 6	B	292	295	parallel
Strand 7	B	332	335	parallel
Strand 8	B	355	358	parallel
Strand 9	B	48	50	parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	102	103	first strand
Strand 2	B	124	128	parallel
Strand 3	B	131	136	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	159	162	first strand
Strand 2	B	182	185	parallel
Strand 3	B	191	195	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	373	374	first strand
Strand 2	B	380	383	anti-parallel
Strand 3	B	419	421	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	3	4	first strand
Strand 2	C	460	463	parallel
Strand 3	C	19	21	anti-parallel

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There are 9 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	48	50	first strand
Strand 2	C	71	74	parallel
Strand 3	C	219	222	parallel
Strand 4	C	243	245	parallel
Strand 5	C	271	276	parallel
Strand 6	C	292	295	parallel
Strand 7	C	332	335	parallel
Strand 8	C	355	358	parallel
Strand 9	C	48	50	parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	102	103	first strand
Strand 2	C	124	128	parallel
Strand 3	C	131	136	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	159	162	first strand
Strand 2	C	182	185	parallel
Strand 3	C	191	195	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	373	374	first strand
Strand 2	C	380	383	anti-parallel
Strand 3	C	419	421	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	3	4	first strand
Strand 2	D	460	463	parallel
Strand 3	D	19	21	anti-parallel

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There are 9 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	48	50	first strand
Strand 2	D	71	74	parallel
Strand 3	D	219	222	parallel
Strand 4	D	243	245	parallel
Strand 5	D	271	276	parallel
Strand 6	D	292	295	parallel
Strand 7	D	332	335	parallel
Strand 8	D	355	358	parallel
Strand 9	D	48	50	parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	102	103	first strand
Strand 2	D	124	128	parallel
Strand 3	D	131	136	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	159	162	first strand
Strand 2	D	182	185	parallel
Strand 3	D	191	195	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	373	374	first strand
Strand 2	D	380	383	anti-parallel
Strand 3	D	419	421	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	3	4	first strand
Strand 2	E	460	463	parallel
Strand 3	E	19	21	anti-parallel

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There are 9 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	48	50	first strand
Strand 2	E	71	74	parallel
Strand 3	E	219	222	parallel
Strand 4	E	243	245	parallel
Strand 5	E	271	276	parallel
Strand 6	E	292	295	parallel
Strand 7	E	332	335	parallel
Strand 8	E	355	358	parallel
Strand 9	E	48	50	parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	102	103	first strand
Strand 2	E	124	128	parallel
Strand 3	E	131	136	anti-parallel

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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	159	162	first strand
Strand 2	E	182	185	parallel
Strand 3	E	191	195	anti-parallel

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There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	373	374	first strand
Strand 2	E	380	383	anti-parallel
Strand 3	E	419	421	anti-parallel

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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	3	4	first strand
Strand 2	F	460	463	parallel
Strand 3	F	19	21	anti-parallel

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There are 9 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	48	50	first strand
Strand 2	F	71	74	parallel
Strand 3	F	219	222	parallel
Strand 4	F	243	245	parallel
Strand 5	F	271	276	parallel
Strand 6	F	292	295	parallel
Strand 7	F	332	335	parallel
Strand 8	F	355	358	parallel
Strand 9	F	48	50	parallel

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There are 3 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	102	103	first strand
Strand 2	F	124	128	parallel
Strand 3	F	131	136	anti-parallel

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There are 3 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	159	162	first strand
Strand 2	F	182	185	parallel
Strand 3	F	191	195	anti-parallel

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There are 3 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	373	374	first strand
Strand 2	F	380	383	anti-parallel
Strand 3	F	419	421	anti-parallel

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There are 3 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	3	4	first strand
Strand 2	G	460	463	parallel
Strand 3	G	19	21	anti-parallel

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There are 9 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	48	50	first strand
Strand 2	G	71	74	parallel
Strand 3	G	219	222	parallel
Strand 4	G	243	245	parallel
Strand 5	G	271	276	parallel
Strand 6	G	292	295	parallel
Strand 7	G	332	335	parallel
Strand 8	G	355	358	parallel
Strand 9	G	48	50	parallel

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There are 3 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	102	103	first strand
Strand 2	G	124	128	parallel
Strand 3	G	131	136	anti-parallel

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There are 3 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	159	162	first strand
Strand 2	G	182	185	parallel
Strand 3	G	191	195	anti-parallel

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There are 3 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	373	374	first strand
Strand 2	G	380	383	anti-parallel
Strand 3	G	419	421	anti-parallel

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There are 3 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	3	4	first strand
Strand 2	H	460	463	parallel
Strand 3	H	19	21	anti-parallel

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There are 9 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	48	50	first strand
Strand 2	H	71	74	parallel
Strand 3	H	219	222	parallel
Strand 4	H	243	245	parallel
Strand 5	H	271	276	parallel
Strand 6	H	292	295	parallel
Strand 7	H	332	335	parallel
Strand 8	H	355	358	parallel
Strand 9	H	48	50	parallel

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There are 3 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	102	103	first strand
Strand 2	H	124	128	parallel
Strand 3	H	131	136	anti-parallel

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There are 3 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	159	162	first strand
Strand 2	H	182	185	parallel
Strand 3	H	191	195	anti-parallel

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There are 3 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	373	374	first strand
Strand 2	H	380	383	anti-parallel
Strand 3	H	419	421	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8RY8

Analysis of interatomic Contacts of Structural Units in PDB entry:
8RY8