Analysis of interatomic Contacts of Structural Units in PDB entry:
8RYA

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8RYA entry

There are 4 chains in PDB entry 8RYA (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	ALA 470
B	MET 1	ALA 470
C	MET 1	ALA 470
D	MET 1	ALA 470

There are 80 helices in PDB entry 8RYA. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	15	17	Right-handed 310
Helix 2	AA2	A	30	34	Right-handed 310
Helix 3	AA3	A	58	68	Right-handed alpha
Helix 4	AA4	A	79	92	Right-handed alpha
Helix 5	AA5	A	108	117	Right-handed alpha
Helix 6	AA6	A	138	143	Right-handed alpha
Helix 7	AA7	A	166	174	Right-handed alpha
Helix 8	AA8	A	197	206	Right-handed alpha
Helix 9	AA9	A	227	238	Right-handed alpha
Helix 10	AB1	A	252	265	Right-handed alpha
Helix 11	AB2	A	278	289	Right-handed alpha
Helix 12	AB3	A	303	310	Right-handed alpha
Helix 13	AB4	A	314	329	Right-handed alpha
Helix 14	AB5	A	341	352	Right-handed alpha
Helix 15	AB6	A	359	364	Right-handed 310
Helix 16	AB7	A	387	398	Right-handed alpha
Helix 17	AB8	A	401	411	Right-handed alpha
Helix 18	AB9	A	428	448	Right-handed alpha
Helix 19	AC1	A	451	459	Right-handed alpha
Helix 20	AC2	A	465	470	Right-handed 310
Helix 21	AC3	B	15	17	Right-handed 310
Helix 22	AC4	B	30	34	Right-handed 310
Helix 23	AC5	B	58	68	Right-handed alpha
Helix 24	AC6	B	79	92	Right-handed alpha
Helix 25	AC7	B	108	117	Right-handed alpha
Helix 26	AC8	B	138	143	Right-handed alpha
Helix 27	AC9	B	166	174	Right-handed alpha
Helix 28	AD1	B	197	206	Right-handed alpha
Helix 29	AD2	B	227	238	Right-handed alpha
Helix 30	AD3	B	252	265	Right-handed alpha
Helix 31	AD4	B	278	289	Right-handed alpha
Helix 32	AD5	B	303	310	Right-handed alpha
Helix 33	AD6	B	314	329	Right-handed alpha
Helix 34	AD7	B	341	352	Right-handed alpha
Helix 35	AD8	B	359	364	Right-handed 310
Helix 36	AD9	B	387	398	Right-handed alpha
Helix 37	AE1	B	401	411	Right-handed alpha
Helix 38	AE2	B	428	448	Right-handed alpha
Helix 39	AE3	B	451	459	Right-handed alpha
Helix 40	AE4	B	465	470	Right-handed 310
Helix 41	AE5	C	15	17	Right-handed 310
Helix 42	AE6	C	30	34	Right-handed 310
Helix 43	AE7	C	58	68	Right-handed alpha
Helix 44	AE8	C	79	92	Right-handed alpha
Helix 45	AE9	C	108	117	Right-handed alpha
Helix 46	AF1	C	138	143	Right-handed alpha
Helix 47	AF2	C	166	174	Right-handed alpha
Helix 48	AF3	C	197	206	Right-handed alpha
Helix 49	AF4	C	227	238	Right-handed alpha
Helix 50	AF5	C	252	265	Right-handed alpha
Helix 51	AF6	C	278	289	Right-handed alpha
Helix 52	AF7	C	303	310	Right-handed alpha
Helix 53	AF8	C	314	329	Right-handed alpha
Helix 54	AF9	C	341	352	Right-handed alpha
Helix 55	AG1	C	359	364	Right-handed 310
Helix 56	AG2	C	387	398	Right-handed alpha
Helix 57	AG3	C	401	411	Right-handed alpha
Helix 58	AG4	C	428	448	Right-handed alpha
Helix 59	AG5	C	451	459	Right-handed alpha
Helix 60	AG6	C	465	470	Right-handed 310
Helix 61	AG7	D	15	17	Right-handed 310
Helix 62	AG8	D	30	34	Right-handed 310
Helix 63	AG9	D	58	68	Right-handed alpha
Helix 64	AH1	D	79	92	Right-handed alpha
Helix 65	AH2	D	108	117	Right-handed alpha
Helix 66	AH3	D	138	143	Right-handed alpha
Helix 67	AH4	D	166	174	Right-handed alpha
Helix 68	AH5	D	197	206	Right-handed alpha
Helix 69	AH6	D	227	238	Right-handed alpha
Helix 70	AH7	D	252	265	Right-handed alpha
Helix 71	AH8	D	278	289	Right-handed alpha
Helix 72	AH9	D	303	310	Right-handed alpha
Helix 73	AI1	D	314	329	Right-handed alpha
Helix 74	AI2	D	341	352	Right-handed alpha
Helix 75	AI3	D	359	364	Right-handed 310
Helix 76	AI4	D	387	398	Right-handed alpha
Helix 77	AI5	D	401	411	Right-handed alpha
Helix 78	AI6	D	428	448	Right-handed alpha
Helix 79	AI7	D	451	459	Right-handed alpha
Helix 80	AI8	D	465	470	Right-handed 310

There are 20 sheets in PDB entry 8RYA. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	3	4	first strand
Strand 2	A	460	463	parallel
Strand 3	A	19	21	anti-parallel

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There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	48	50	first strand
Strand 2	A	71	74	parallel
Strand 3	A	219	222	parallel
Strand 4	A	243	246	parallel
Strand 5	A	271	276	parallel
Strand 6	A	292	295	parallel
Strand 7	A	332	335	parallel
Strand 8	A	355	358	parallel
Strand 9	A	48	50	parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	102	103	first strand
Strand 2	A	123	128	parallel
Strand 3	A	131	137	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	159	162	first strand
Strand 2	A	181	185	parallel
Strand 3	A	191	196	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	373	374	first strand
Strand 2	A	380	384	anti-parallel
Strand 3	A	418	421	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	3	4	first strand
Strand 2	B	460	463	parallel
Strand 3	B	19	21	anti-parallel

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There are 9 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	48	50	first strand
Strand 2	B	71	74	parallel
Strand 3	B	219	222	parallel
Strand 4	B	243	246	parallel
Strand 5	B	271	276	parallel
Strand 6	B	292	295	parallel
Strand 7	B	332	335	parallel
Strand 8	B	355	358	parallel
Strand 9	B	48	50	parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	102	103	first strand
Strand 2	B	123	128	parallel
Strand 3	B	131	137	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	159	162	first strand
Strand 2	B	181	185	parallel
Strand 3	B	191	196	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	373	374	first strand
Strand 2	B	380	384	anti-parallel
Strand 3	B	418	421	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	3	4	first strand
Strand 2	C	460	463	parallel
Strand 3	C	19	21	anti-parallel

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There are 9 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	48	50	first strand
Strand 2	C	71	74	parallel
Strand 3	C	219	222	parallel
Strand 4	C	243	246	parallel
Strand 5	C	271	276	parallel
Strand 6	C	292	295	parallel
Strand 7	C	332	335	parallel
Strand 8	C	355	358	parallel
Strand 9	C	48	50	parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	102	103	first strand
Strand 2	C	123	128	parallel
Strand 3	C	131	137	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	159	162	first strand
Strand 2	C	181	185	parallel
Strand 3	C	191	196	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	373	374	first strand
Strand 2	C	380	384	anti-parallel
Strand 3	C	418	421	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	3	4	first strand
Strand 2	D	460	463	parallel
Strand 3	D	19	21	anti-parallel

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There are 9 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	48	50	first strand
Strand 2	D	71	74	parallel
Strand 3	D	219	222	parallel
Strand 4	D	243	246	parallel
Strand 5	D	271	276	parallel
Strand 6	D	292	295	parallel
Strand 7	D	332	335	parallel
Strand 8	D	355	358	parallel
Strand 9	D	48	50	parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	102	103	first strand
Strand 2	D	123	128	parallel
Strand 3	D	131	137	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	159	162	first strand
Strand 2	D	181	185	parallel
Strand 3	D	191	196	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	373	374	first strand
Strand 2	D	380	384	anti-parallel
Strand 3	D	418	421	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8RYA

Analysis of interatomic Contacts of Structural Units in PDB entry:
8RYA