Analysis of interatomic Contacts of Structural Units in PDB entry:
8RYF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8RYF entry

There are 2 chains in PDB entry 8RYF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 14PHE 245
B
 THR 26GLY 246
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 22 helices in PDB entry 8RYF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
15 20Right-handed 310
Helix 2
AA2
A
22 29Right-handed alpha
Helix 3
AA3
A
30 33Right-handed 310
Helix 4
AA4
A
34 36Right-handed 310
Helix 5
AA5
A
37 55Right-handed alpha
Helix 6
AA6
A
70 78Right-handed alpha
Helix 7
AA7
A
87 101Right-handed alpha
Helix 8
AA8
A
113 121Right-handed alpha
Helix 9
AA9
A
135 140Right-handed 310
Helix 10
AB1
A
142 149Right-handed alpha
Helix 11
AB2
A
165 179Right-handed alpha
Helix 12
AB3
A
207 218Right-handed alpha
Helix 13
AB4
B
29 33Right-handed 310
Helix 14
AB5
B
34 36Right-handed 310
Helix 15
AB6
B
37 55Right-handed alpha
Helix 16
AB7
B
70 78Right-handed alpha
Helix 17
AB8
B
87 101Right-handed alpha
Helix 18
AB9
B
113 121Right-handed alpha
Helix 19
AC1
B
136 140Right-handed 310
Helix 20
AC2
B
142 154Right-handed alpha
Helix 21
AC3
B
165 179Right-handed alpha
Helix 22
AC4
B
207 218Right-handed alpha
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There are 4 sheets in PDB entry 8RYF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
107 111first strand
Strand 2
A
80 85parallel
Strand 3
A
59 63parallel
Strand 4
A
128 132parallel
Strand 5
A
156 162parallel
Strand 6
A
231 238anti-parallel
Strand 7
A
220 228anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
185 189first strand
Strand 2
A
192 196anti-parallel
Strand 3
A
202 204anti-parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
107 111first strand
Strand 2
B
80 85parallel
Strand 3
B
59 63parallel
Strand 4
B
128 132parallel
Strand 5
B
156 162parallel
Strand 6
B
231 238anti-parallel
Strand 7
B
220 227anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
185 187first strand
Strand 2
B
194 196anti-parallel
Strand 3
B
202 204anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il