Analysis of interatomic Contacts of Structural Units in PDB entry:
8RYG


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8RYG entry

There are 2 chains in PDB entry 8RYG (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 2GLU 233
B
 SER 2GLU 233
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 31 helices in PDB entry 8RYG. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
3 9Right-handed alpha
Helix 2
AA2
A
10 21Right-handed 310
Helix 3
AA3
A
22 38Right-handed alpha
Helix 4
AA4
A
39 43Right-handed 310
Helix 5
AA5
A
56 64Right-handed alpha
Helix 6
AA6
A
73 88Right-handed alpha
Helix 7
AA7
A
100 102Right-handed 310
Helix 8
AA8
A
103 108Right-handed alpha
Helix 9
AA9
A
109 113Right-handed 310
Helix 10
AB1
A
116 118Right-handed 310
Helix 11
AB2
A
125 132Right-handed 310
Helix 12
AB3
A
134 146Right-handed alpha
Helix 13
AB4
A
157 169Right-handed alpha
Helix 14
AB5
A
170 172Right-handed 310
Helix 15
AB6
A
199 210Right-handed alpha
Helix 16
AB7
A
229 233Right-handed 310
Helix 17
AB8
B
3 9Right-handed alpha
Helix 18
AB9
B
10 21Right-handed 310
Helix 19
AC1
B
22 40Right-handed alpha
Helix 20
AC2
B
41 43Right-handed 310
Helix 21
AC3
B
56 63Right-handed alpha
Helix 22
AC4
B
73 88Right-handed alpha
Helix 23
AC5
B
100 102Right-handed 310
Helix 24
AC6
B
103 108Right-handed alpha
Helix 25
AC7
B
109 113Right-handed 310
Helix 26
AC8
B
116 118Right-handed 310
Helix 27
AC9
B
125 132Right-handed 310
Helix 28
AD1
B
134 146Right-handed alpha
Helix 29
AD2
B
157 170Right-handed alpha
Helix 30
AD3
B
199 210Right-handed alpha
Helix 31
AD4
B
229 233Right-handed 310
Back to top of page

There are 4 sheets in PDB entry 8RYG. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
94 98first strand
Strand 2
A
66 71parallel
Strand 3
A
45 49parallel
Strand 4
A
120 124parallel
Strand 5
A
149 154parallel
Strand 6
A
223 228anti-parallel
Strand 7
A
215 219anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
177 180first strand
Strand 2
A
184 189anti-parallel
Strand 3
A
193 198anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
94 98first strand
Strand 2
B
66 71parallel
Strand 3
B
45 49parallel
Strand 4
B
120 124parallel
Strand 5
B
149 154parallel
Strand 6
B
223 228anti-parallel
Strand 7
B
215 219anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
177 180first strand
Strand 2
B
184 189anti-parallel
Strand 3
B
193 198anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il