Analysis of interatomic Contacts of Structural Units in PDB entry:
8RYI


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8RYI entry

There are 4 chains in PDB entry 8RYI (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
C
 SER 6ARG 341
B
 THR 8PRO 357
A
 SER 6THR 342
E
 PHE -3GLU 259
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are104 helices in PDB entry 8RYI. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
C
7 11Right-handed 310
Helix 2
AA2
C
29 33Right-handed 310
Helix 3
AA3
C
39 46Right-handed alpha
Helix 4
AA4
C
66 68Right-handed 310
Helix 5
AA5
C
69 79Right-handed alpha
Helix 6
AA6
C
108 126Right-handed alpha
Helix 7
AA7
C
138 152Right-handed alpha
Helix 8
AA8
C
178 180Right-handed 310
Helix 9
AA9
C
181 187Right-handed alpha
Helix 10
AB1
C
193 195Right-handed 310
Helix 11
AB2
C
208 219Right-handed alpha
Helix 12
AB3
C
224 231Right-handed alpha
Helix 13
AB4
C
233 246Right-handed alpha
Helix 14
AB5
C
258 260Right-handed 310
Helix 15
AB6
C
277 290Right-handed alpha
Helix 16
AB7
C
303 307Right-handed 310
Helix 17
AB8
C
310 331Right-handed alpha
Helix 18
AB9
B
28 32Right-handed 310
Helix 19
AC1
B
48 52Right-handed 310
Helix 20
AC2
B
58 66Right-handed alpha
Helix 21
AC3
B
85 87Right-handed 310
Helix 22
AC4
B
88 98Right-handed alpha
Helix 23
AC5
B
111 116Right-handed alpha
Helix 24
AC6
B
129 147Right-handed alpha
Helix 25
AC7
B
160 173Right-handed alpha
Helix 26
AC8
B
201 209Right-handed alpha
Helix 27
AC9
B
228 239Right-handed alpha
Helix 28
AD1
B
244 252Right-handed alpha
Helix 29
AD2
B
252 266Right-handed alpha
Helix 30
AD3
B
278 280Right-handed 310
Helix 31
AD4
B
297 312Right-handed alpha
Helix 32
AD5
B
322 326Right-handed 310
Helix 33
AD6
B
329 354Right-handed alpha
Helix 34
AD7
A
7 11Right-handed 310
Helix 35
AD8
A
29 33Right-handed 310
Helix 36
AD9
A
39 47Right-handed alpha
Helix 37
AE1
A
66 68Right-handed 310
Helix 38
AE2
A
69 79Right-handed alpha
Helix 39
AE3
A
108 127Right-handed alpha
Helix 40
AE4
A
138 152Right-handed alpha
Helix 41
AE5
A
178 180Right-handed 310
Helix 42
AE6
A
181 187Right-handed alpha
Helix 43
AE7
A
193 195Right-handed 310
Helix 44
AE8
A
208 219Right-handed alpha
Helix 45
AE9
A
224 231Right-handed alpha
Helix 46
AF1
A
233 246Right-handed alpha
Helix 47
AF2
A
258 260Right-handed 310
Helix 48
AF3
A
277 290Right-handed alpha
Helix 49
AF4
A
303 307Right-handed 310
Helix 50
AF5
A
310 331Right-handed alpha
Helix 51
AF6
E
-2 3Right-handed alpha
Helix 52
AF7
E
28 32Right-handed 310
Helix 53
AF8
E
48 52Right-handed 310
Helix 54
AF9
E
58 66Right-handed alpha
Helix 55
AG1
E
85 87Right-handed 310
Helix 56
AG2
E
88 98Right-handed alpha
Helix 57
AG3
E
111 116Right-handed alpha
Helix 58
AG4
E
129 147Right-handed alpha
Helix 59
AG5
E
160 173Right-handed alpha
Helix 60
AG6
E
201 209Right-handed alpha
Helix 61
AG7
E
228 239Right-handed alpha
Helix 62
AG8
E
244 252Right-handed alpha
Helix 63
AG9
E
252 266Right-handed alpha
Helix 64
AH1
E
278 280Right-handed 310
Helix 65
AH2
E
297 312Right-handed alpha
Helix 66
AH3
E
322 326Right-handed 310
Helix 67
AH4
E
329 353Right-handed alpha
Helix 68
AH5
F
7 11Right-handed 310
Helix 69
AH6
F
29 33Right-handed 310
Helix 70
AH7
F
39 47Right-handed alpha
Helix 71
AH8
F
66 68Right-handed 310
Helix 72
AH9
F
69 79Right-handed alpha
Helix 73
AI1
F
109 127Right-handed alpha
Helix 74
AI2
F
138 152Right-handed alpha
Helix 75
AI3
F
178 180Right-handed 310
Helix 76
AI4
F
181 187Right-handed alpha
Helix 77
AI5
F
208 219Right-handed alpha
Helix 78
AI6
F
224 231Right-handed alpha
Helix 79
AI7
F
233 246Right-handed alpha
Helix 80
AI8
F
258 260Right-handed 310
Helix 81
AI9
F
261 265Right-handed 310
Helix 82
AJ1
F
277 290Right-handed alpha
Helix 83
AJ2
F
303 307Right-handed 310
Helix 84
AJ3
F
310 331Right-handed alpha
Helix 85
AJ4
F
340 344Right-handed 310
Helix 86
AJ5
D
7 11Right-handed 310
Helix 87
AJ6
D
29 33Right-handed 310
Helix 88
AJ7
D
39 47Right-handed alpha
Helix 89
AJ8
D
66 68Right-handed 310
Helix 90
AJ9
D
69 79Right-handed alpha
Helix 91
AK1
D
108 126Right-handed alpha
Helix 92
AK2
D
138 152Right-handed alpha
Helix 93
AK3
D
178 180Right-handed 310
Helix 94
AK4
D
181 187Right-handed alpha
Helix 95
AK5
D
193 195Right-handed 310
Helix 96
AK6
D
208 219Right-handed alpha
Helix 97
AK7
D
224 231Right-handed alpha
Helix 98
AK8
D
233 246Right-handed alpha
Helix 99
AK9
D
258 260Right-handed 310
Helix 100
AL1
D
261 265Right-handed 310
Helix 101
AL2
D
277 290Right-handed alpha
Helix 102
AL3
D
303 307Right-handed 310
Helix 103
AL4
D
310 331Right-handed alpha
Helix 104
AL5
D
340 344Right-handed 310
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There are 11 sheets in PDB entry 8RYI. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
22 23first strand
Strand 2
D
96 102anti-parallel
Strand 3
D
50 54parallel
Strand 4
D
129 133parallel
Strand 5
D
296 300parallel
Strand 6
D
250 256parallel
Strand 7
D
157 162parallel
Strand 8
D
197 200parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
96 101first strand
Strand 2
C
50 55parallel
Strand 3
C
129 134parallel
Strand 4
C
296 300parallel
Strand 5
C
250 256parallel
Strand 6
C
157 162parallel
Strand 7
C
197 200parallel
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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
117 122first strand
Strand 2
B
69 74parallel
Strand 3
B
150 155parallel
Strand 4
B
315 319parallel
Strand 5
B
270 276parallel
Strand 6
B
177 182parallel
Strand 7
B
212 220parallel
Strand 8
B
241 243parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
103 104first strand
Strand 2
B
109 110anti-parallel
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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
96 101first strand
Strand 2
A
50 54parallel
Strand 3
A
129 133parallel
Strand 4
A
296 300parallel
Strand 5
A
250 256parallel
Strand 6
A
157 162parallel
Strand 7
A
197 200parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
84 85first strand
Strand 2
A
90 91anti-parallel
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There are 8 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
117 122first strand
Strand 2
E
69 74parallel
Strand 3
E
150 155parallel
Strand 4
E
315 319parallel
Strand 5
E
270 276parallel
Strand 6
E
177 182parallel
Strand 7
E
212 220parallel
Strand 8
E
241 243parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
103 104first strand
Strand 2
E
109 110anti-parallel
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There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
96 98first strand
Strand 2
F
50 54parallel
Strand 3
F
129 133parallel
Strand 4
F
296 300parallel
Strand 5
F
250 256parallel
Strand 6
F
157 162parallel
Strand 7
F
192 200parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
84 85first strand
Strand 2
F
90 91anti-parallel
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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
84 85first strand
Strand 2
D
90 91anti-parallel
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