Analysis of interatomic Contacts of Structural Units in PDB entry:
8RZ0

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8RZ0 entry

There are 8 chains in PDB entry 8RZ0 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 5	GLN 119
B	GLY 0	HIS 264
C	SER 5	GLN 119
D	GLN 1	ARG 260
E	SER 5	GLN 119
F	GLN 1	THR 262
G	TYR 6	GLN 119
H	GLN 1	ALA 97

There are 36 helices in PDB entry 8RZ0. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	5	35	Right-handed alpha
Helix 2	AA2	A	41	76	Right-handed alpha
Helix 3	AA3	A	87	118	Right-handed alpha
Helix 4	AA4	B	28	31	Right-handed 310
Helix 5	AA5	B	62	65	Right-handed 310
Helix 6	AA6	B	74	76	Right-handed 310
Helix 7	AA7	B	87	91	Right-handed 310
Helix 8	AA8	B	107	112	Right-handed alpha
Helix 9	AA9	B	232	236	Right-handed 310
Helix 10	AB1	C	6	33	Right-handed alpha
Helix 11	AB2	C	41	80	Right-handed alpha
Helix 12	AB3	C	86	118	Right-handed alpha
Helix 13	AB4	D	28	31	Right-handed 310
Helix 14	AB5	D	62	65	Right-handed 310
Helix 15	AB6	D	74	76	Right-handed 310
Helix 16	AB7	D	87	91	Right-handed 310
Helix 17	AB8	D	107	112	Right-handed alpha
Helix 18	AB9	D	232	236	Right-handed 310
Helix 19	AC1	E	6	35	Right-handed alpha
Helix 20	AC2	E	41	80	Right-handed alpha
Helix 21	AC3	E	85	119	Right-handed alpha
Helix 22	AC4	F	28	31	Right-handed 310
Helix 23	AC5	F	62	65	Right-handed 310
Helix 24	AC6	F	74	76	Right-handed 310
Helix 25	AC7	F	87	91	Right-handed 310
Helix 26	AC8	F	107	112	Right-handed alpha
Helix 27	AC9	F	232	236	Right-handed 310
Helix 28	AD1	G	7	33	Right-handed alpha
Helix 29	AD2	G	41	73	Right-handed alpha
Helix 30	AD3	G	92	118	Right-handed alpha
Helix 31	AD4	H	28	31	Right-handed 310
Helix 32	AD5	H	62	65	Right-handed 310
Helix 33	AD6	H	74	76	Right-handed 310
Helix 34	AD7	H	87	91	Right-handed 310
Helix 35	AD8	H	107	112	Right-handed alpha
Helix 36	AD9	H	232	236	Right-handed 310

There are 20 sheets in PDB entry 8RZ0. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	3	6	first strand
Strand 2	B	18	25	anti-parallel
Strand 3	B	78	83	anti-parallel
Strand 4	B	68	73	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	10	12	first strand
Strand 2	B	123	127	parallel
Strand 3	B	92	99	anti-parallel
Strand 4	B	33	39	anti-parallel
Strand 5	B	45	52	anti-parallel
Strand 6	B	58	60	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	157	160	first strand
Strand 2	B	172	178	anti-parallel
Strand 3	B	223	228	anti-parallel
Strand 4	B	215	220	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	163	166	first strand
Strand 2	B	255	259	parallel
Strand 3	B	238	243	anti-parallel
Strand 4	B	186	191	anti-parallel
Strand 5	B	198	202	anti-parallel
Strand 6	B	206	207	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	163	166	first strand
Strand 2	B	255	259	parallel
Strand 3	B	238	243	anti-parallel
Strand 4	B	250	251	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	3	6	first strand
Strand 2	D	18	25	anti-parallel
Strand 3	D	78	83	anti-parallel
Strand 4	D	68	73	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	10	12	first strand
Strand 2	D	123	127	parallel
Strand 3	D	92	99	anti-parallel
Strand 4	D	33	39	anti-parallel
Strand 5	D	45	52	anti-parallel
Strand 6	D	58	60	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	157	160	first strand
Strand 2	D	172	178	anti-parallel
Strand 3	D	223	228	anti-parallel
Strand 4	D	215	220	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	163	166	first strand
Strand 2	D	255	259	parallel
Strand 3	D	238	243	anti-parallel
Strand 4	D	186	191	anti-parallel
Strand 5	D	198	202	anti-parallel
Strand 6	D	206	207	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	163	166	first strand
Strand 2	D	255	259	parallel
Strand 3	D	238	243	anti-parallel
Strand 4	D	250	251	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	3	6	first strand
Strand 2	F	18	25	anti-parallel
Strand 3	F	78	83	anti-parallel
Strand 4	F	68	73	anti-parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	10	12	first strand
Strand 2	F	123	127	parallel
Strand 3	F	92	99	anti-parallel
Strand 4	F	33	39	anti-parallel
Strand 5	F	46	52	anti-parallel
Strand 6	F	58	60	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	157	160	first strand
Strand 2	F	172	178	anti-parallel
Strand 3	F	223	228	anti-parallel
Strand 4	F	215	220	anti-parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	163	166	first strand
Strand 2	F	255	259	parallel
Strand 3	F	238	243	anti-parallel
Strand 4	F	186	191	anti-parallel
Strand 5	F	198	202	anti-parallel
Strand 6	F	206	207	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	163	166	first strand
Strand 2	F	255	259	parallel
Strand 3	F	238	243	anti-parallel
Strand 4	F	250	251	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	3	6	first strand
Strand 2	H	18	25	anti-parallel
Strand 3	H	78	83	anti-parallel
Strand 4	H	68	73	anti-parallel

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There are 6 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	10	12	first strand
Strand 2	H	123	127	parallel
Strand 3	H	92	99	anti-parallel
Strand 4	H	33	39	anti-parallel
Strand 5	H	45	52	anti-parallel
Strand 6	H	58	60	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	157	160	first strand
Strand 2	H	172	178	anti-parallel
Strand 3	H	223	228	anti-parallel
Strand 4	H	215	220	anti-parallel

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There are 6 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	163	166	first strand
Strand 2	H	255	259	parallel
Strand 3	H	238	243	anti-parallel
Strand 4	H	186	191	anti-parallel
Strand 5	H	198	202	anti-parallel
Strand 6	H	206	207	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	163	166	first strand
Strand 2	H	255	259	parallel
Strand 3	H	238	243	anti-parallel
Strand 4	H	250	251	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8RZ0

Analysis of interatomic Contacts of Structural Units in PDB entry:
8RZ0