Analysis of interatomic Contacts of Structural Units in PDB entry:
8RZ2

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8RZ2 entry

There are 3 chains in PDB entry 8RZ2 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 158	LEU 501
B	GLU 1	LYS 221
C	SER 2	PRO 212

There are 17 helices in PDB entry 8RZ2. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	176	194	Right-handed alpha
Helix 2	AA2	A	196	201	Right-handed 310
Helix 3	AA3	A	202	222	Right-handed alpha
Helix 4	AA4	A	224	240	Right-handed alpha
Helix 5	AA5	A	300	320	Right-handed alpha
Helix 6	AA6	A	321	342	Right-handed alpha
Helix 7	AA7	A	353	364	Right-handed alpha
Helix 8	AA8	A	364	373	Right-handed alpha
Helix 9	AA9	A	375	396	Right-handed alpha
Helix 10	AB1	A	405	445	Right-handed alpha
Helix 11	AB2	A	451	500	Right-handed alpha
Helix 12	AB3	B	28	32	Right-handed 310
Helix 13	AB4	B	62	65	Right-handed 310
Helix 14	AB5	B	87	91	Right-handed 310
Helix 15	AB6	C	80	84	Right-handed 310
Helix 16	AB7	C	125	130	Right-handed alpha
Helix 17	AB8	C	185	191	Right-handed alpha

There are 13 sheets in PDB entry 8RZ2. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	161	164	first strand
Strand 2	A	172	175	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	3	7	first strand
Strand 2	B	18	25	anti-parallel
Strand 3	B	78	83	anti-parallel
Strand 4	B	68	73	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	10	12	first strand
Strand 2	B	114	118	parallel
Strand 3	B	92	99	anti-parallel
Strand 4	B	33	39	anti-parallel
Strand 5	B	45	51	anti-parallel
Strand 6	B	58	60	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	10	12	first strand
Strand 2	B	114	118	parallel
Strand 3	B	92	99	anti-parallel
Strand 4	B	107	110	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	127	131	first strand
Strand 2	B	145	152	anti-parallel
Strand 3	B	183	189	anti-parallel
Strand 4	B	170	172	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	127	131	first strand
Strand 2	B	145	152	anti-parallel
Strand 3	B	183	189	anti-parallel
Strand 4	B	176	177	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	158	160	first strand
Strand 2	B	200	207	anti-parallel
Strand 3	B	212	220	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	9	12	first strand
Strand 2	C	105	109	parallel
Strand 3	C	86	93	anti-parallel
Strand 4	C	35	39	anti-parallel
Strand 5	C	46	50	anti-parallel
Strand 6	C	54	55	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	9	12	first strand
Strand 2	C	105	109	parallel
Strand 3	C	86	93	anti-parallel
Strand 4	C	98	101	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	18	23	first strand
Strand 2	C	71	76	anti-parallel
Strand 3	C	63	68	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	118	122	first strand
Strand 2	C	135	143	anti-parallel
Strand 3	C	176	183	anti-parallel
Strand 4	C	163	165	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	118	122	first strand
Strand 2	C	135	143	anti-parallel
Strand 3	C	176	183	anti-parallel
Strand 4	C	169	170	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	157	158	first strand
Strand 2	C	149	154	anti-parallel
Strand 3	C	195	201	anti-parallel
Strand 4	C	204	210	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8RZ2

Analysis of interatomic Contacts of Structural Units in PDB entry:
8RZ2