Analysis of interatomic Contacts of Structural Units in PDB entry:
8RZA


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8RZA entry

There are 3 chains in PDB entry 8RZA (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 5LEU 469
R
 U 1 U 3
B
 U 1 U 3
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 8RZA. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
15 26Right-handed alpha
Helix 2
AA2
A
34 42Right-handed alpha
Helix 3
AA3
A
67 79Right-handed alpha
Helix 4
AA4
A
121 123Right-handed 310
Helix 5
AA5
A
177 190Right-handed alpha
Helix 6
AA6
A
202 205Right-handed 310
Helix 7
AA7
A
208 224Right-handed alpha
Helix 8
AA8
A
225 232Right-handed 310
Helix 9
AA9
A
250 263Right-handed alpha
Helix 10
AB1
A
270 275Right-handed alpha
Helix 11
AB2
A
278 295Right-handed alpha
Helix 12
AB3
A
298 315Right-handed alpha
Helix 13
AB4
A
437 447Right-handed alpha
Helix 14
AB5
A
451 469Right-handed alpha
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There are 4 sheets in PDB entry 8RZA. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
29 30first strand
Strand 2
A
8 11parallel
Strand 3
A
52 56parallel
Strand 4
A
60 65anti-parallel
Strand 5
A
244 249anti-parallel
Strand 6
A
82 86anti-parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
236 239first strand
Strand 2
A
94 102anti-parallel
Strand 3
A
131 139anti-parallel
Strand 4
A
143 146anti-parallel
Strand 5
A
115 119parallel
Strand 6
A
106 110anti-parallel
Strand 7
A
94 102anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
151 152first strand
Strand 2
A
156 160anti-parallel
Strand 3
A
196 200anti-parallel
Strand 4
A
169 171parallel
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There are 10 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
410 411first strand
Strand 2
A
433 436first strand
Strand 3
A
321 327first strand
Strand 4
A
333 345anti-parallel
Strand 5
A
350 356anti-parallel
Strand 6
A
375 381anti-parallel
Strand 7
A
386 392anti-parallel
Strand 8
A
398 406anti-parallel
Strand 9
A
415 427anti-parallel
Strand 10
A
433 436anti-parallel
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