Analysis of interatomic Contacts of Structural Units in PDB entry:
8RZF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8RZF entry

There is 1 chain in PDB entry 8RZF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1GLU 415
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 8RZF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
9 20Right-handed alpha
Helix 2
AA2
A
28 35Right-handed alpha
Helix 3
AA3
A
64 72Right-handed alpha
Helix 4
AA4
A
146 163Right-handed alpha
Helix 5
AA5
A
171 176Right-handed 310
Helix 6
AA6
A
177 194Right-handed alpha
Helix 7
AA7
A
210 223Right-handed alpha
Helix 8
AA8
A
230 235Right-handed alpha
Helix 9
AA9
A
239 248Right-handed alpha
Helix 10
AB1
A
253 261Right-handed alpha
Helix 11
AB2
A
383 390Right-handed alpha
Helix 12
AB3
A
390 395Right-handed alpha
Helix 13
AB4
A
395 414Right-handed alpha
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There are 5 sheets in PDB entry 8RZF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
23 24first strand
Strand 2
A
2 5parallel
Strand 3
A
46 50parallel
Strand 4
A
56 61anti-parallel
Strand 5
A
203 208anti-parallel
Strand 6
A
77 79anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
87 89first strand
Strand 2
A
106 111anti-parallel
Strand 3
A
117 121anti-parallel
Strand 4
A
98 101parallel
Strand 5
A
94 95anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
125 126first strand
Strand 2
A
130 134anti-parallel
Strand 3
A
165 169anti-parallel
Strand 4
A
139 141parallel
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There are 10 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
357 359first strand
Strand 2
A
378 382first strand
Strand 3
A
265 272first strand
Strand 4
A
278 291anti-parallel
Strand 5
A
296 303anti-parallel
Strand 6
A
322 328anti-parallel
Strand 7
A
333 339anti-parallel
Strand 8
A
345 353anti-parallel
Strand 9
A
362 375anti-parallel
Strand 10
A
378 382anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
309 310first strand
Strand 2
A
315 316anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il