Analysis of interatomic Contacts of Structural Units in PDB entry:
8S05


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8S05 entry

There are 2 chains in PDB entry 8S05 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 2HIS 382
B
 MET 2PRO 250
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 27 helices in PDB entry 8S05. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
48 52Right-handed 310
Helix 2
AA2
A
53 70Right-handed alpha
Helix 3
AA3
A
96 103Right-handed alpha
Helix 4
AA4
A
111 125Right-handed alpha
Helix 5
AA5
A
145 152Right-handed alpha
Helix 6
AA6
A
170 181Right-handed alpha
Helix 7
AA7
A
190 198Right-handed alpha
Helix 8
AA8
A
199 202Right-handed 310
Helix 9
AA9
A
285 291Right-handed alpha
Helix 10
AB1
A
294 316Right-handed alpha
Helix 11
AB2
A
318 337Right-handed alpha
Helix 12
AB3
A
338 359Right-handed alpha
Helix 13
AB4
A
360 380Right-handed alpha
Helix 14
AB5
B
48 52Right-handed 310
Helix 15
AB6
B
53 70Right-handed alpha
Helix 16
AB7
B
93 95Right-handed 310
Helix 17
AB8
B
96 103Right-handed alpha
Helix 18
AB9
B
111 125Right-handed alpha
Helix 19
AC1
B
145 152Right-handed alpha
Helix 20
AC2
B
170 181Right-handed alpha
Helix 21
AC3
B
190 198Right-handed alpha
Helix 22
AC4
B
199 202Right-handed 310
Helix 23
AC5
B
285 292Right-handed alpha
Helix 24
AC6
B
294 316Right-handed alpha
Helix 25
AC7
B
318 337Right-handed alpha
Helix 26
AC8
B
338 359Right-handed alpha
Helix 27
AC9
B
360 381Right-handed alpha
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There are 10 sheets in PDB entry 8S05. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
3 10first strand
Strand 2
A
20 31anti-parallel
Strand 3
A
240 248anti-parallel
Strand 4
A
221 223anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
14 15first strand
Strand 2
A
271 282parallel
Strand 3
A
254 264anti-parallel
Strand 4
A
208 217anti-parallel
Strand 5
A
231 236anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
34 35first strand
Strand 2
A
205 206anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
86 92first strand
Strand 2
A
75 81anti-parallel
Strand 3
A
40 46parallel
Strand 4
A
130 136parallel
Strand 5
A
158 165parallel
Strand 6
A
184 188parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
4 10first strand
Strand 2
B
20 30anti-parallel
Strand 3
B
240 248anti-parallel
Strand 4
B
221 223anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
14 15first strand
Strand 2
B
271 282parallel
Strand 3
B
254 264anti-parallel
Strand 4
B
208 217anti-parallel
Strand 5
B
231 236anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
34 35first strand
Strand 2
B
205 206anti-parallel
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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
85 92first strand
Strand 2
B
75 81anti-parallel
Strand 3
B
40 46parallel
Strand 4
B
130 136parallel
Strand 5
B
158 165parallel
Strand 6
B
184 188parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
18 20first strand
Strand 2
C
27 29anti-parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
19 20first strand
Strand 2
D
27 28anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il