Analysis of interatomic Contacts of Structural Units in PDB entry:
8S0M

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8S0M entry

There are 5 chains in PDB entry 8S0M (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	ASN 128	GLY 492
E	ASN 128	GLY 492
U	GLN 1	HIS 131
A	THR 10	CYS 366
D	THR 10	ARG 141

There are 44 helices in PDB entry 8S0M. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	177	188	Right-handed alpha
Helix 2	AA2	B	220	223	Right-handed 310
Helix 3	AA3	B	295	299	Right-handed 310
Helix 4	AA4	B	304	307	Right-handed 310
Helix 5	AA5	B	316	320	Right-handed 310
Helix 6	AA6	B	406	411	Right-handed alpha
Helix 7	AA7	B	435	439	Right-handed 310
Helix 8	AA8	B	477	492	Right-handed alpha
Helix 9	AA9	E	177	189	Right-handed alpha
Helix 10	AB1	E	295	299	Right-handed 310
Helix 11	AB2	E	304	307	Right-handed 310
Helix 12	AB3	E	316	320	Right-handed 310
Helix 13	AB4	E	406	411	Right-handed alpha
Helix 14	AB5	E	480	492	Right-handed alpha
Helix 15	AB6	U	28	30	Right-handed 310
Helix 16	AB7	U	87	91	Right-handed 310
Helix 17	AB8	U	111	115	Right-handed 310
Helix 18	AB9	A	22	28	Right-handed alpha
Helix 19	AC1	A	35	38	Right-handed 310
Helix 20	AC2	A	49	57	Right-handed alpha
Helix 21	AC3	A	69	73	Right-handed 310
Helix 22	AC4	A	88	96	Right-handed 310
Helix 23	AC5	A	101	107	Right-handed alpha
Helix 24	AC6	A	126	128	Right-handed 310
Helix 25	AC7	A	136	142	Right-handed alpha
Helix 26	AC8	A	172	177	Right-handed alpha
Helix 27	AC9	A	247	250	Right-handed 310
Helix 28	AD1	A	262	264	Right-handed 310
Helix 29	AD2	A	303	307	Right-handed 310
Helix 30	AD3	A	331	336	Right-handed alpha
Helix 31	AD4	D	22	28	Right-handed alpha
Helix 32	AD5	D	35	38	Right-handed 310
Helix 33	AD6	D	49	57	Right-handed alpha
Helix 34	AD7	D	69	73	Right-handed 310
Helix 35	AD8	D	88	96	Right-handed 310
Helix 36	AD9	D	101	107	Right-handed alpha
Helix 37	AE1	D	126	128	Right-handed 310
Helix 38	AE2	D	136	142	Right-handed alpha
Helix 39	AE3	D	172	177	Right-handed alpha
Helix 40	AE4	D	247	250	Right-handed 310
Helix 41	AE5	D	262	264	Right-handed 310
Helix 42	AE6	D	331	337	Right-handed 310
Helix 43	AE7	V	28	30	Right-handed 310
Helix 44	AE8	V	87	91	Right-handed 310

There are 32 sheets in PDB entry 8S0M. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	149	152	first strand
Strand 2	B	157	161	anti-parallel
Strand 3	B	168	170	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	196	200	first strand
Strand 2	B	236	240	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	209	212	first strand
Strand 2	B	225	228	anti-parallel

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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	270	275	first strand
Strand 2	B	278	287	anti-parallel
Strand 3	B	290	293	anti-parallel
Strand 4	B	347	351	anti-parallel
Strand 5	B	326	333	anti-parallel
Strand 6	B	309	312	anti-parallel
Strand 7	B	270	275	anti-parallel

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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	378	383	first strand
Strand 2	B	398	405	anti-parallel
Strand 3	B	424	428	anti-parallel
Strand 4	B	472	476	anti-parallel
Strand 5	B	452	461	anti-parallel
Strand 6	B	444	449	anti-parallel
Strand 7	B	378	383	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	149	152	first strand
Strand 2	E	157	162	anti-parallel
Strand 3	E	167	170	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	196	200	first strand
Strand 2	E	236	240	anti-parallel

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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	270	275	first strand
Strand 2	E	278	287	anti-parallel
Strand 3	E	290	293	anti-parallel
Strand 4	E	347	351	anti-parallel
Strand 5	E	326	333	anti-parallel
Strand 6	E	309	312	anti-parallel
Strand 7	E	270	275	anti-parallel

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There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	378	383	first strand
Strand 2	E	398	405	anti-parallel
Strand 3	E	424	428	anti-parallel
Strand 4	E	472	476	anti-parallel
Strand 5	E	452	461	anti-parallel
Strand 6	E	444	449	anti-parallel
Strand 7	E	378	383	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	U	3	7	first strand
Strand 2	U	18	25	anti-parallel
Strand 3	U	78	83	anti-parallel
Strand 4	U	68	73	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	U	11	12	first strand
Strand 2	U	122	126	parallel
Strand 3	U	92	100	anti-parallel
Strand 4	U	32	39	anti-parallel
Strand 5	U	45	51	anti-parallel
Strand 6	U	58	60	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	U	11	12	first strand
Strand 2	U	122	126	parallel
Strand 3	U	92	100	anti-parallel
Strand 4	U	117	118	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	11	13	first strand
Strand 2	A	313	318	parallel
Strand 3	A	321	330	anti-parallel
Strand 4	A	360	364	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	31	33	first strand
Strand 2	A	129	131	parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	39	43	first strand
Strand 2	A	76	86	anti-parallel
Strand 3	A	279	291	anti-parallel
Strand 4	A	116	124	anti-parallel
Strand 5	A	58	65	anti-parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	47	48	first strand
Strand 2	A	296	298	parallel
Strand 3	A	76	86	anti-parallel
Strand 4	A	279	291	anti-parallel
Strand 5	A	275	276	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	153	157	first strand
Strand 2	A	269	273	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	160	162	first strand
Strand 2	A	230	232	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	167	171	first strand
Strand 2	A	194	196	parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	198	201	first strand
Strand 2	A	209	212	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	244	245	first strand
Strand 2	A	266	267	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	11	13	first strand
Strand 2	D	313	318	parallel
Strand 3	D	321	329	anti-parallel
Strand 4	D	361	364	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	31	33	first strand
Strand 2	D	129	131	parallel

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There are 5 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	39	43	first strand
Strand 2	D	76	86	anti-parallel
Strand 3	D	279	291	anti-parallel
Strand 4	D	116	124	anti-parallel
Strand 5	D	58	65	anti-parallel

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There are 5 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	47	48	first strand
Strand 2	D	296	298	parallel
Strand 3	D	76	86	anti-parallel
Strand 4	D	279	291	anti-parallel
Strand 5	D	275	276	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	153	157	first strand
Strand 2	D	269	273	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	160	162	first strand
Strand 2	D	230	232	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	198	201	first strand
Strand 2	D	209	212	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	244	245	first strand
Strand 2	D	266	267	anti-parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	V	3	7	first strand
Strand 2	V	18	25	anti-parallel
Strand 3	V	78	83	anti-parallel
Strand 4	V	68	73	anti-parallel

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There are 6 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	V	11	12	first strand
Strand 2	V	122	126	parallel
Strand 3	V	92	100	anti-parallel
Strand 4	V	32	39	anti-parallel
Strand 5	V	45	51	anti-parallel
Strand 6	V	58	60	anti-parallel

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There are 4 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	V	11	12	first strand
Strand 2	V	122	126	parallel
Strand 3	V	92	100	anti-parallel
Strand 4	V	117	118	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8S0M

Analysis of interatomic Contacts of Structural Units in PDB entry:
8S0M