Analysis of interatomic Contacts of Structural Units in PDB entry:
8S19


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8S19 entry

There are 2 chains in PDB entry 8S19 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 566SER 931
B
 ASN 566GLU 930
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 26 helices in PDB entry 8S19. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
579 583Right-handed 310
Helix 2
AA2
A
585 587Right-handed 310
Helix 3
AA3
A
630 648Right-handed alpha
Helix 4
AA4
A
677 685Right-handed alpha
Helix 5
AA5
A
765 786Right-handed alpha
Helix 6
AA6
A
794 796Right-handed 310
Helix 7
AA7
A
832 836Right-handed 310
Helix 8
AA8
A
837 844Right-handed alpha
Helix 9
AA9
A
847 864Right-handed alpha
Helix 10
AB1
A
876 886Right-handed alpha
Helix 11
AB2
A
896 907Right-handed alpha
Helix 12
AB3
A
910 914Right-handed 310
Helix 13
AB4
A
916 930Right-handed alpha
Helix 14
AB5
B
579 583Right-handed 310
Helix 15
AB6
B
585 587Right-handed 310
Helix 16
AB7
B
630 648Right-handed alpha
Helix 17
AB8
B
677 685Right-handed alpha
Helix 18
AB9
B
765 786Right-handed alpha
Helix 19
AC1
B
794 796Right-handed 310
Helix 20
AC2
B
832 836Right-handed 310
Helix 21
AC3
B
837 844Right-handed alpha
Helix 22
AC4
B
847 864Right-handed alpha
Helix 23
AC5
B
876 886Right-handed alpha
Helix 24
AC6
B
896 907Right-handed alpha
Helix 25
AC7
B
910 914Right-handed 310
Helix 26
AC8
B
916 930Right-handed alpha
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There are 8 sheets in PDB entry 8S19. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
589 597first strand
Strand 2
A
601 609anti-parallel
Strand 3
A
617 625anti-parallel
Strand 4
A
667 670anti-parallel
Strand 5
A
656 660anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
788 789first strand
Strand 2
A
815 816anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
798 800first strand
Strand 2
A
806 808anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
823 824first strand
Strand 2
A
845 846anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
589 598first strand
Strand 2
B
601 609anti-parallel
Strand 3
B
617 624anti-parallel
Strand 4
B
667 671anti-parallel
Strand 5
B
656 660anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
788 789first strand
Strand 2
B
815 816anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
798 800first strand
Strand 2
B
806 808anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
823 824first strand
Strand 2
B
845 846anti-parallel
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