Analysis of interatomic Contacts of Structural Units in PDB entry:
8S1J


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8S1J entry

There are 2 chains in PDB entry 8S1J (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 17LYS 316
B
 ALA 16GLY 317
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 35 helices in PDB entry 8S1J. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
23 31Right-handed alpha
Helix 2
AA2
A
36 46Right-handed alpha
Helix 3
AA3
A
50 66Right-handed alpha
Helix 4
AA4
A
68 77Right-handed alpha
Helix 5
AA5
A
80 85Right-handed alpha
Helix 6
AA6
A
85 104Right-handed alpha
Helix 7
AA7
A
107 128Right-handed alpha
Helix 8
AA8
A
133 146Right-handed alpha
Helix 9
AA9
A
146 155Right-handed alpha
Helix 10
AB1
A
161 178Right-handed alpha
Helix 11
AB2
A
192 205Right-handed alpha
Helix 12
AB3
A
211 230Right-handed alpha
Helix 13
AB4
A
231 233Right-handed 310
Helix 14
AB5
A
234 246Right-handed alpha
Helix 15
AB6
A
247 254Right-handed alpha
Helix 16
AB7
A
260 281Right-handed alpha
Helix 17
AB8
A
288 295Right-handed alpha
Helix 18
AB9
A
300 304Right-handed 310
Helix 19
AC1
B
23 31Right-handed alpha
Helix 20
AC2
B
36 46Right-handed alpha
Helix 21
AC3
B
50 66Right-handed alpha
Helix 22
AC4
B
68 77Right-handed alpha
Helix 23
AC5
B
80 85Right-handed alpha
Helix 24
AC6
B
85 104Right-handed alpha
Helix 25
AC7
B
107 128Right-handed alpha
Helix 26
AC8
B
133 155Right-handed alpha
Helix 27
AC9
B
161 177Right-handed alpha
Helix 28
AD1
B
192 205Right-handed alpha
Helix 29
AD2
B
211 230Right-handed alpha
Helix 30
AD3
B
231 233Right-handed 310
Helix 31
AD4
B
234 246Right-handed alpha
Helix 32
AD5
B
247 254Right-handed alpha
Helix 33
AD6
B
260 281Right-handed alpha
Helix 34
AD7
B
288 296Right-handed alpha
Helix 35
AD8
B
300 304Right-handed 310
Back to top of page
There are no sheets in PDB entry 8S1J
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il