Analysis of interatomic Contacts of Structural Units in PDB entry:
8S1L

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8S1L entry

There are 8 chains in PDB entry 8S1L (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	PHE 65
A	ASN 67	PRO 231
B	ASP 2	PHE 65
B	ASN 67	PRO 231
C	THR 2	LEU 317
D	THR 2	ASN 309
E	MET 1	PHE 65
E	ASN 67	ILE 156

There are 84 helices in PDB entry 8S1L. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	3	7	Right-handed 310
Helix 2	AA2	A	57	61	Right-handed 310
Helix 3	AA3	A	79	84	Right-handed alpha
Helix 4	AA4	B	57	62	Right-handed 310
Helix 5	AA5	B	81	85	Right-handed 310
Helix 6	AA6	C	7	14	Right-handed 310
Helix 7	AA7	C	16	22	Right-handed alpha
Helix 8	AA8	C	56	61	Right-handed 310
Helix 9	AA9	C	63	67	Right-handed 310
Helix 10	AB1	C	93	107	Right-handed alpha
Helix 11	AB2	C	120	132	Right-handed alpha
Helix 12	AB3	C	161	167	Right-handed alpha
Helix 13	AB4	C	169	176	Right-handed alpha
Helix 14	AB5	C	179	184	Right-handed alpha
Helix 15	AB6	C	195	204	Right-handed alpha
Helix 16	AB7	C	205	208	Right-handed 310
Helix 17	AB8	C	210	212	Right-handed 310
Helix 18	AB9	C	213	219	Right-handed alpha
Helix 19	AC1	C	220	223	Right-handed 310
Helix 20	AC2	C	230	247	Right-handed alpha
Helix 21	AC3	C	262	272	Right-handed alpha
Helix 22	AC4	C	286	290	Right-handed 310
Helix 23	AC5	C	291	308	Right-handed alpha
Helix 24	AC6	C	309	311	Right-handed 310
Helix 25	AC7	D	7	14	Right-handed 310
Helix 26	AC8	D	17	22	Right-handed alpha
Helix 27	AC9	D	56	61	Right-handed 310
Helix 28	AD1	D	63	68	Right-handed alpha
Helix 29	AD2	D	93	107	Right-handed alpha
Helix 30	AD3	D	121	133	Right-handed alpha
Helix 31	AD4	D	161	167	Right-handed alpha
Helix 32	AD5	D	169	176	Right-handed alpha
Helix 33	AD6	D	179	184	Right-handed alpha
Helix 34	AD7	D	184	189	Right-handed alpha
Helix 35	AD8	D	195	204	Right-handed alpha
Helix 36	AD9	D	205	207	Right-handed 310
Helix 37	AE1	D	210	212	Right-handed 310
Helix 38	AE2	D	213	219	Right-handed alpha
Helix 39	AE3	D	220	223	Right-handed 310
Helix 40	AE4	D	230	247	Right-handed alpha
Helix 41	AE5	D	262	272	Right-handed alpha
Helix 42	AE6	D	286	290	Right-handed 310
Helix 43	AE7	D	291	307	Right-handed alpha
Helix 44	AE8	E	57	63	Right-handed 310
Helix 45	AE9	F	57	62	Right-handed 310
Helix 46	AF1	F	81	85	Right-handed 310
Helix 47	AF2	G	7	14	Right-handed 310
Helix 48	AF3	G	17	22	Right-handed alpha
Helix 49	AF4	G	56	61	Right-handed 310
Helix 50	AF5	G	63	68	Right-handed alpha
Helix 51	AF6	G	93	106	Right-handed alpha
Helix 52	AF7	G	107	109	Right-handed 310
Helix 53	AF8	G	121	133	Right-handed alpha
Helix 54	AF9	G	161	167	Right-handed alpha
Helix 55	AG1	G	171	176	Right-handed alpha
Helix 56	AG2	G	179	184	Right-handed alpha
Helix 57	AG3	G	184	189	Right-handed alpha
Helix 58	AG4	G	195	204	Right-handed alpha
Helix 59	AG5	G	205	207	Right-handed 310
Helix 60	AG6	G	210	212	Right-handed 310
Helix 61	AG7	G	213	219	Right-handed alpha
Helix 62	AG8	G	220	223	Right-handed 310
Helix 63	AG9	G	230	245	Right-handed alpha
Helix 64	AH1	G	262	272	Right-handed alpha
Helix 65	AH2	G	286	290	Right-handed 310
Helix 66	AH3	G	291	307	Right-handed alpha
Helix 67	AH4	H	10	14	Right-handed 310
Helix 68	AH5	H	16	23	Right-handed alpha
Helix 69	AH6	H	56	61	Right-handed 310
Helix 70	AH7	H	63	71	Right-handed 310
Helix 71	AH8	H	93	107	Right-handed alpha
Helix 72	AH9	H	120	132	Right-handed alpha
Helix 73	AI1	H	161	167	Right-handed alpha
Helix 74	AI2	H	170	177	Right-handed alpha
Helix 75	AI3	H	179	184	Right-handed alpha
Helix 76	AI4	H	195	204	Right-handed alpha
Helix 77	AI5	H	205	208	Right-handed 310
Helix 78	AI6	H	210	212	Right-handed 310
Helix 79	AI7	H	213	219	Right-handed alpha
Helix 80	AI8	H	220	223	Right-handed 310
Helix 81	AI9	H	230	247	Right-handed alpha
Helix 82	AJ1	H	262	272	Right-handed alpha
Helix 83	AJ2	H	286	291	Right-handed alpha
Helix 84	AJ3	H	291	311	Right-handed alpha

There are 19 sheets in PDB entry 8S1L. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	13	16	first strand
Strand 2	A	31	34	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	44	46	first strand
Strand 2	A	210	213	anti-parallel
Strand 3	A	199	200	anti-parallel

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There are 9 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	71	72	first strand
Strand 2	A	216	219	parallel
Strand 3	A	191	196	anti-parallel
Strand 4	A	144	151	anti-parallel
Strand 5	A	154	165	anti-parallel
Strand 6	A	170	179	anti-parallel
Strand 7	A	93	97	anti-parallel
Strand 8	A	102	105	anti-parallel
Strand 9	A	124	125	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	71	72	first strand
Strand 2	A	216	219	parallel
Strand 3	A	191	196	anti-parallel
Strand 4	A	144	151	anti-parallel
Strand 5	A	154	165	anti-parallel
Strand 6	A	138	142	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	109	111	first strand
Strand 2	A	116	118	anti-parallel

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There are 12 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	25	27	first strand
Strand 2	B	16	22	anti-parallel
Strand 3	B	118	125	parallel
Strand 4	B	102	109	anti-parallel
Strand 5	B	89	97	anti-parallel
Strand 6	B	170	181	anti-parallel
Strand 7	B	155	165	anti-parallel
Strand 8	B	144	150	anti-parallel
Strand 9	B	191	200	anti-parallel
Strand 10	B	209	219	anti-parallel
Strand 11	B	42	47	anti-parallel
Strand 12	B	32	35	anti-parallel

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There are 8 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	25	27	first strand
Strand 2	B	16	22	anti-parallel
Strand 3	B	118	125	parallel
Strand 4	B	102	109	anti-parallel
Strand 5	B	89	97	anti-parallel
Strand 6	B	170	181	anti-parallel
Strand 7	B	155	165	anti-parallel
Strand 8	B	138	141	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	25	29	first strand
Strand 2	C	32	36	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	72	74	first strand
Strand 2	C	46	50	parallel
Strand 3	C	114	118	parallel
Strand 4	C	137	142	parallel
Strand 5	C	252	257	parallel
Strand 6	C	276	281	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	28	29	first strand
Strand 2	D	32	33	anti-parallel

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There are 7 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	36	38	first strand
Strand 2	D	72	76	anti-parallel
Strand 3	D	46	50	parallel
Strand 4	D	114	119	parallel
Strand 5	D	137	143	parallel
Strand 6	D	252	259	parallel
Strand 7	D	276	283	parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	116	117	first strand
Strand 2	E	11	15	parallel
Strand 3	E	33	36	anti-parallel
Strand 4	E	41	45	anti-parallel
Strand 5	E	211	215	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	20	22	first strand
Strand 2	E	25	27	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	89	90	first strand
Strand 2	E	170	181	anti-parallel
Strand 3	E	154	165	anti-parallel
Strand 4	E	138	141	anti-parallel

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There are 7 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	124	125	first strand
Strand 2	E	102	105	anti-parallel
Strand 3	E	93	97	anti-parallel
Strand 4	E	170	181	anti-parallel
Strand 5	E	154	165	anti-parallel
Strand 6	E	144	151	anti-parallel
Strand 7	E	191	196	anti-parallel

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There are 11 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	12	15	first strand
Strand 2	F	30	35	anti-parallel
Strand 3	F	42	47	anti-parallel
Strand 4	F	210	216	anti-parallel
Strand 5	F	192	200	anti-parallel
Strand 6	F	144	150	anti-parallel
Strand 7	F	155	165	anti-parallel
Strand 8	F	170	181	anti-parallel
Strand 9	F	89	90	anti-parallel
Strand 10	F	108	109	anti-parallel
Strand 11	F	118	119	anti-parallel

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There are 8 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	25	27	first strand
Strand 2	F	19	22	anti-parallel
Strand 3	F	121	125	parallel
Strand 4	F	102	105	anti-parallel
Strand 5	F	93	97	anti-parallel
Strand 6	F	170	181	anti-parallel
Strand 7	F	155	165	anti-parallel
Strand 8	F	138	141	anti-parallel

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There are 8 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	25	29	first strand
Strand 2	G	32	38	anti-parallel
Strand 3	G	72	76	anti-parallel
Strand 4	G	46	50	parallel
Strand 5	G	114	119	parallel
Strand 6	G	137	143	parallel
Strand 7	G	252	257	parallel
Strand 8	G	276	281	parallel

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There are 8 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	25	29	first strand
Strand 2	H	32	38	anti-parallel
Strand 3	H	72	76	anti-parallel
Strand 4	H	46	50	parallel
Strand 5	H	114	118	parallel
Strand 6	H	137	142	parallel
Strand 7	H	252	259	parallel
Strand 8	H	276	283	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8S1L

Analysis of interatomic Contacts of Structural Units in PDB entry:
8S1L