Analysis of interatomic Contacts of Structural Units in PDB entry:
8S1T


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8S1T entry

There are 2 chains in PDB entry 8S1T (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 5HIS 442
B
 SER 2GLU 181
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 84 helices in PDB entry 8S1T. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
15 33Right-handed alpha
Helix 2
AA2
A
34 37Right-handed 310
Helix 3
AA3
A
49 54Right-handed alpha
Helix 4
AA4
A
64 73Right-handed alpha
Helix 5
AA5
A
74 89Right-handed alpha
Helix 6
AA6
A
95 108Right-handed alpha
Helix 7
AA7
A
129 143Right-handed alpha
Helix 8
AA8
A
155 159Right-handed 310
Helix 9
AA9
A
160 183Right-handed alpha
Helix 10
AB1
A
187 211Right-handed alpha
Helix 11
AB2
A
212 214Right-handed 310
Helix 12
AB3
A
220 226Right-handed alpha
Helix 13
AB4
A
228 235Right-handed alpha
Helix 14
AB5
A
237 258Right-handed alpha
Helix 15
AB6
A
280 288Right-handed alpha
Helix 16
AB7
A
297 302Right-handed alpha
Helix 17
AB8
A
319 324Right-handed 310
Helix 18
AB9
A
329 343Right-handed alpha
Helix 19
AC1
A
344 351Right-handed 310
Helix 20
AC2
A
352 367Right-handed alpha
Helix 21
AC3
A
380 385Right-handed alpha
Helix 22
AC4
A
386 397Right-handed alpha
Helix 23
AC5
A
410 414Right-handed 310
Helix 24
AC6
A
415 442Right-handed alpha
Helix 25
AC7
B
6 15Right-handed alpha
Helix 26
AC8
B
15 28Right-handed alpha
Helix 27
AC9
B
40 47Right-handed alpha
Helix 28
AD1
B
73 85Right-handed alpha
Helix 29
AD2
B
100 114Right-handed alpha
Helix 30
AD3
B
133 154Right-handed alpha
Helix 31
AD4
B
158 182Right-handed alpha
Helix 32
AD5
B
183 185Right-handed 310
Helix 33
AD6
B
191 202Right-handed alpha
Helix 34
AD7
B
206 221Right-handed alpha
Helix 35
AD8
B
222 224Right-handed 310
Helix 36
AD9
B
243 251Right-handed alpha
Helix 37
AE1
B
265 270Right-handed alpha
Helix 38
AE2
B
278 290Right-handed alpha
Helix 39
AE3
B
293 297Right-handed 310
Helix 40
AE4
B
301 314Right-handed alpha
Helix 41
AE5
B
327 344Right-handed alpha
Helix 42
AE6
B
358 374Right-handed alpha
Helix 43
AE7
C
15 33Right-handed alpha
Helix 44
AE8
C
49 54Right-handed alpha
Helix 45
AE9
C
64 73Right-handed alpha
Helix 46
AF1
C
74 89Right-handed alpha
Helix 47
AF2
C
95 108Right-handed alpha
Helix 48
AF3
C
129 143Right-handed alpha
Helix 49
AF4
C
155 159Right-handed 310
Helix 50
AF5
C
160 183Right-handed alpha
Helix 51
AF6
C
187 211Right-handed alpha
Helix 52
AF7
C
212 214Right-handed 310
Helix 53
AF8
C
220 226Right-handed alpha
Helix 54
AF9
C
228 235Right-handed alpha
Helix 55
AG1
C
237 258Right-handed alpha
Helix 56
AG2
C
276 279Right-handed 310
Helix 57
AG3
C
280 289Right-handed alpha
Helix 58
AG4
C
297 302Right-handed alpha
Helix 59
AG5
C
319 324Right-handed 310
Helix 60
AG6
C
329 343Right-handed alpha
Helix 61
AG7
C
344 351Right-handed 310
Helix 62
AG8
C
352 367Right-handed alpha
Helix 63
AG9
C
380 385Right-handed alpha
Helix 64
AH1
C
386 398Right-handed alpha
Helix 65
AH2
C
410 414Right-handed 310
Helix 66
AH3
C
415 431Right-handed alpha
Helix 67
AH4
D
6 15Right-handed alpha
Helix 68
AH5
D
15 28Right-handed alpha
Helix 69
AH6
D
40 47Right-handed alpha
Helix 70
AH7
D
73 85Right-handed alpha
Helix 71
AH8
D
100 114Right-handed alpha
Helix 72
AH9
D
133 154Right-handed alpha
Helix 73
AI1
D
158 182Right-handed alpha
Helix 74
AI2
D
183 185Right-handed 310
Helix 75
AI3
D
191 202Right-handed alpha
Helix 76
AI4
D
206 221Right-handed alpha
Helix 77
AI5
D
222 224Right-handed 310
Helix 78
AI6
D
243 251Right-handed alpha
Helix 79
AI7
D
265 270Right-handed alpha
Helix 80
AI8
D
278 290Right-handed alpha
Helix 81
AI9
D
293 297Right-handed 310
Helix 82
AJ1
D
301 314Right-handed alpha
Helix 83
AJ2
D
327 344Right-handed alpha
Helix 84
AJ3
D
358 374Right-handed alpha
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There are 10 sheets in PDB entry 8S1T. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
59 63first strand
Strand 2
A
39 43parallel
Strand 3
A
121 126parallel
Strand 4
A
146 150parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
291 296first strand
Strand 2
A
267 271parallel
Strand 3
A
371 377parallel
Strand 4
A
401 406parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
306 308first strand
Strand 2
A
314 316anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
50 53first strand
Strand 2
B
31 35parallel
Strand 3
B
93 97parallel
Strand 4
B
119 123parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
255 261first strand
Strand 2
B
232 237parallel
Strand 3
B
318 324parallel
Strand 4
B
348 353parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
59 63first strand
Strand 2
C
39 43parallel
Strand 3
C
121 126parallel
Strand 4
C
146 150parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
291 296first strand
Strand 2
C
267 271parallel
Strand 3
C
371 377parallel
Strand 4
C
401 406parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
306 308first strand
Strand 2
C
314 316anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
50 53first strand
Strand 2
D
31 35parallel
Strand 3
D
93 97parallel
Strand 4
D
119 123parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
255 261first strand
Strand 2
D
232 237parallel
Strand 3
D
318 324parallel
Strand 4
D
348 353parallel
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