Analysis of interatomic Contacts of Structural Units in PDB entry:
8S2M


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8S2M entry

There are 2 chains in PDB entry 8S2M (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 3LEU 134
B
 ASP 9ARG 136
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 8S2M. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
50 62Right-handed alpha
Helix 2
AA2
A
69 73Right-handed 310
Helix 3
AA3
A
79 87Right-handed alpha
Helix 4
AA4
A
101 103Right-handed 310
Helix 5
AA5
A
119 133Right-handed alpha
Helix 6
AA6
B
20 28Right-handed alpha
Helix 7
AA7
B
37 44Right-handed alpha
Helix 8
AA8
B
58 61Right-handed 310
Helix 9
AA9
B
62 67Right-handed alpha
Helix 10
AB1
B
87 92Right-handed alpha
Helix 11
AB2
B
93 95Right-handed 310
Helix 12
AB3
B
97 100Right-handed 310
Helix 13
AB4
B
110 112Right-handed 310
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There are 4 sheets in PDB entry 8S2M. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
41 48first strand
Strand 2
A
31 38anti-parallel
Strand 3
A
16 27anti-parallel
Strand 4
A
4 13anti-parallel
Strand 5
A
65 67anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
76 77first strand
Strand 2
A
90 93anti-parallel
Strand 3
A
105 107anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
11 17first strand
Strand 2
B
74 81anti-parallel
Strand 3
B
114 120anti-parallel
Strand 4
B
126 132anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
52 56first strand
Strand 2
B
102 106anti-parallel
Strand 3
B
85 86anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il