Analysis of interatomic Contacts of Structural Units in PDB entry:
8S39


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8S39 entry

There are 3 chains in PDB entry 8S39 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 7ALA 411
B
 MET 1ALA 411
C
 ASN -1ALA 411
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 60 helices in PDB entry 8S39. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
7 19Right-handed alpha
Helix 2
AA2
A
21 30Right-handed alpha
Helix 3
AA3
A
76 94Right-handed alpha
Helix 4
AA4
A
108 112Right-handed 310
Helix 5
AA5
A
113 129Right-handed alpha
Helix 6
AA6
A
146 162Right-handed alpha
Helix 7
AA7
A
164 168Right-handed 310
Helix 8
AA8
A
172 176Right-handed 310
Helix 9
AA9
A
183 200Right-handed alpha
Helix 10
AB1
A
203 206Right-handed 310
Helix 11
AB2
A
215 228Right-handed alpha
Helix 12
AB3
A
249 259Right-handed alpha
Helix 13
AB4
A
262 266Right-handed 310
Helix 14
AB5
A
273 277Right-handed 310
Helix 15
AB6
A
298 302Right-handed 310
Helix 16
AB7
A
316 326Right-handed alpha
Helix 17
AB8
A
332 337Right-handed alpha
Helix 18
AB9
A
338 354Right-handed alpha
Helix 19
AC1
A
358 385Right-handed alpha
Helix 20
AC2
A
387 408Right-handed alpha
Helix 21
AC3
B
2 19Right-handed alpha
Helix 22
AC4
B
21 30Right-handed alpha
Helix 23
AC5
B
76 94Right-handed alpha
Helix 24
AC6
B
108 112Right-handed 310
Helix 25
AC7
B
113 129Right-handed alpha
Helix 26
AC8
B
146 162Right-handed alpha
Helix 27
AC9
B
164 168Right-handed 310
Helix 28
AD1
B
172 176Right-handed 310
Helix 29
AD2
B
180 199Right-handed alpha
Helix 30
AD3
B
203 206Right-handed 310
Helix 31
AD4
B
215 228Right-handed alpha
Helix 32
AD5
B
249 259Right-handed alpha
Helix 33
AD6
B
262 266Right-handed 310
Helix 34
AD7
B
273 278Right-handed 310
Helix 35
AD8
B
298 302Right-handed 310
Helix 36
AD9
B
316 326Right-handed alpha
Helix 37
AE1
B
332 337Right-handed alpha
Helix 38
AE2
B
338 354Right-handed alpha
Helix 39
AE3
B
358 385Right-handed alpha
Helix 40
AE4
B
387 408Right-handed alpha
Helix 41
AE5
C
2 19Right-handed alpha
Helix 42
AE6
C
21 30Right-handed alpha
Helix 43
AE7
C
76 94Right-handed alpha
Helix 44
AE8
C
108 112Right-handed 310
Helix 45
AE9
C
113 129Right-handed alpha
Helix 46
AF1
C
146 162Right-handed alpha
Helix 47
AF2
C
164 168Right-handed 310
Helix 48
AF3
C
172 176Right-handed 310
Helix 49
AF4
C
183 200Right-handed alpha
Helix 50
AF5
C
203 206Right-handed 310
Helix 51
AF6
C
215 228Right-handed alpha
Helix 52
AF7
C
249 259Right-handed alpha
Helix 53
AF8
C
262 266Right-handed 310
Helix 54
AF9
C
273 277Right-handed 310
Helix 55
AG1
C
298 302Right-handed 310
Helix 56
AG2
C
316 326Right-handed alpha
Helix 57
AG3
C
332 337Right-handed alpha
Helix 58
AG4
C
338 353Right-handed alpha
Helix 59
AG5
C
358 385Right-handed alpha
Helix 60
AG6
C
387 408Right-handed alpha
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There are 7 sheets in PDB entry 8S39. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
33 42first strand
Strand 2
A
48 57anti-parallel
Strand 3
A
99 105anti-parallel
Strand 4
A
65 71parallel
Strand 5
A
137 141parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
270 271first strand
Strand 2
A
241 243anti-parallel
Strand 3
A
231 236anti-parallel
Strand 4
A
208 212parallel
Strand 5
A
284 287parallel
Strand 6
A
306 308parallel
Strand 7
A
329 331parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
33 42first strand
Strand 2
B
48 57anti-parallel
Strand 3
B
99 105anti-parallel
Strand 4
B
65 71parallel
Strand 5
B
137 141parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
270 271first strand
Strand 2
B
241 243anti-parallel
Strand 3
B
231 236anti-parallel
Strand 4
B
208 212parallel
Strand 5
B
284 287parallel
Strand 6
B
306 308parallel
Strand 7
B
329 331parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
33 42first strand
Strand 2
C
48 59anti-parallel
Strand 3
C
99 105anti-parallel
Strand 4
C
69 71parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
33 42first strand
Strand 2
C
48 59anti-parallel
Strand 3
C
99 105anti-parallel
Strand 4
C
65 66parallel
Strand 5
C
137 138parallel
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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
270 272first strand
Strand 2
C
241 243anti-parallel
Strand 3
C
231 236anti-parallel
Strand 4
C
208 212parallel
Strand 5
C
284 287parallel
Strand 6
C
306 308parallel
Strand 7
C
329 331parallel
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