Analysis of interatomic Contacts of Structural Units in PDB entry:
8S3E

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8S3E entry

There are 8 chains in PDB entry 8S3E (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLN 19	GLY 1060
B	GLN 19	GLY 1060
C	GLN 19	GLY 1060
D	GLN 19	GLY 1060
E	ARG 251	GLN 298
F	ARG 251	GLN 298
G	ARG 251	GLN 298
H	ARG 251	GLN 298

There are188 helices in PDB entry 8S3E. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	21	54	Right-handed alpha
Helix 2	AA2	A	92	106	Right-handed alpha
Helix 3	AA3	A	109	134	Right-handed alpha
Helix 4	AA4	A	147	171	Right-handed alpha
Helix 5	AA5	A	173	179	Right-handed alpha
Helix 6	AA6	A	180	200	Right-handed alpha
Helix 7	AA7	A	206	215	Right-handed 310
Helix 8	AA8	A	216	224	Right-handed alpha
Helix 9	AA9	A	229	260	Right-handed alpha
Helix 10	AB1	A	261	265	Right-handed 310
Helix 11	AB2	A	273	286	Right-handed alpha
Helix 12	AB3	A	297	328	Right-handed alpha
Helix 13	AB4	A	352	364	Right-handed alpha
Helix 14	AB5	A	384	394	Right-handed alpha
Helix 15	AB6	A	407	414	Right-handed alpha
Helix 16	AB7	A	415	419	Right-handed 310
Helix 17	AB8	A	432	451	Right-handed alpha
Helix 18	AB9	A	462	470	Right-handed alpha
Helix 19	AC1	A	486	500	Right-handed alpha
Helix 20	AC2	A	502	512	Right-handed alpha
Helix 21	AC3	A	523	533	Right-handed alpha
Helix 22	AC4	A	549	560	Right-handed alpha
Helix 23	AC5	A	601	610	Right-handed alpha
Helix 24	AC6	A	699	704	Right-handed alpha
Helix 25	AC7	A	706	713	Right-handed alpha
Helix 26	AC8	A	734	739	Right-handed alpha
Helix 27	AC9	A	740	743	Right-handed 310
Helix 28	AD1	A	747	751	Right-handed 310
Helix 29	AD2	A	759	767	Right-handed alpha
Helix 30	AD3	A	768	770	Right-handed 310
Helix 31	AD4	A	785	793	Right-handed alpha
Helix 32	AD5	A	794	797	Right-handed 310
Helix 33	AD6	A	806	808	Right-handed 310
Helix 34	AD7	A	812	816	Right-handed 310
Helix 35	AD8	A	817	829	Right-handed alpha
Helix 36	AD9	A	874	876	Right-handed 310
Helix 37	AE1	A	884	891	Right-handed 310
Helix 38	AE2	A	906	911	Right-handed alpha
Helix 39	AE3	A	916	921	Right-handed 310
Helix 40	AE4	A	922	930	Right-handed alpha
Helix 41	AE5	A	932	942	Right-handed alpha
Helix 42	AE6	A	946	957	Right-handed alpha
Helix 43	AE7	A	965	970	Right-handed 310
Helix 44	AE8	A	984	986	Right-handed 310
Helix 45	AE9	A	987	992	Right-handed alpha
Helix 46	AF1	A	995	1008	Right-handed alpha
Helix 47	AF2	B	21	54	Right-handed alpha
Helix 48	AF3	B	92	106	Right-handed alpha
Helix 49	AF4	B	109	134	Right-handed alpha
Helix 50	AF5	B	147	171	Right-handed alpha
Helix 51	AF6	B	173	179	Right-handed alpha
Helix 52	AF7	B	180	200	Right-handed alpha
Helix 53	AF8	B	206	215	Right-handed 310
Helix 54	AF9	B	216	224	Right-handed alpha
Helix 55	AG1	B	229	260	Right-handed alpha
Helix 56	AG2	B	261	265	Right-handed 310
Helix 57	AG3	B	273	286	Right-handed alpha
Helix 58	AG4	B	297	328	Right-handed alpha
Helix 59	AG5	B	352	364	Right-handed alpha
Helix 60	AG6	B	384	394	Right-handed alpha
Helix 61	AG7	B	407	414	Right-handed alpha
Helix 62	AG8	B	415	419	Right-handed 310
Helix 63	AG9	B	432	451	Right-handed alpha
Helix 64	AH1	B	462	470	Right-handed alpha
Helix 65	AH2	B	486	500	Right-handed alpha
Helix 66	AH3	B	502	512	Right-handed alpha
Helix 67	AH4	B	523	533	Right-handed alpha
Helix 68	AH5	B	549	560	Right-handed alpha
Helix 69	AH6	B	601	610	Right-handed alpha
Helix 70	AH7	B	699	704	Right-handed alpha
Helix 71	AH8	B	706	713	Right-handed alpha
Helix 72	AH9	B	734	739	Right-handed alpha
Helix 73	AI1	B	740	743	Right-handed 310
Helix 74	AI2	B	747	751	Right-handed 310
Helix 75	AI3	B	759	767	Right-handed alpha
Helix 76	AI4	B	768	770	Right-handed 310
Helix 77	AI5	B	785	793	Right-handed alpha
Helix 78	AI6	B	794	797	Right-handed 310
Helix 79	AI7	B	806	808	Right-handed 310
Helix 80	AI8	B	812	816	Right-handed 310
Helix 81	AI9	B	817	829	Right-handed alpha
Helix 82	AJ1	B	874	876	Right-handed 310
Helix 83	AJ2	B	884	891	Right-handed 310
Helix 84	AJ3	B	906	911	Right-handed alpha
Helix 85	AJ4	B	916	921	Right-handed 310
Helix 86	AJ5	B	922	930	Right-handed alpha
Helix 87	AJ6	B	932	942	Right-handed alpha
Helix 88	AJ7	B	946	957	Right-handed alpha
Helix 89	AJ8	B	965	970	Right-handed 310
Helix 90	AJ9	B	984	986	Right-handed 310
Helix 91	AK1	B	987	992	Right-handed alpha
Helix 92	AK2	B	995	1008	Right-handed alpha
Helix 93	AK3	C	21	54	Right-handed alpha
Helix 94	AK4	C	92	106	Right-handed alpha
Helix 95	AK5	C	109	134	Right-handed alpha
Helix 96	AK6	C	147	171	Right-handed alpha
Helix 97	AK7	C	173	179	Right-handed alpha
Helix 98	AK8	C	180	200	Right-handed alpha
Helix 99	AK9	C	206	215	Right-handed 310
Helix 100	AL1	C	216	224	Right-handed alpha
Helix 101	AL2	C	229	260	Right-handed alpha
Helix 102	AL3	C	261	265	Right-handed 310
Helix 103	AL4	C	273	286	Right-handed alpha
Helix 104	AL5	C	297	328	Right-handed alpha
Helix 105	AL6	C	352	364	Right-handed alpha
Helix 106	AL7	C	384	394	Right-handed alpha
Helix 107	AL8	C	407	414	Right-handed alpha
Helix 108	AL9	C	415	419	Right-handed 310
Helix 109	AM1	C	432	451	Right-handed alpha
Helix 110	AM2	C	462	470	Right-handed alpha
Helix 111	AM3	C	486	500	Right-handed alpha
Helix 112	AM4	C	502	512	Right-handed alpha
Helix 113	AM5	C	523	533	Right-handed alpha
Helix 114	AM6	C	549	560	Right-handed alpha
Helix 115	AM7	C	601	610	Right-handed alpha
Helix 116	AM8	C	699	704	Right-handed alpha
Helix 117	AM9	C	706	713	Right-handed alpha
Helix 118	AN1	C	734	739	Right-handed alpha
Helix 119	AN2	C	740	743	Right-handed 310
Helix 120	AN3	C	747	751	Right-handed 310
Helix 121	AN4	C	759	767	Right-handed alpha
Helix 122	AN5	C	768	770	Right-handed 310
Helix 123	AN6	C	785	793	Right-handed alpha
Helix 124	AN7	C	794	797	Right-handed 310
Helix 125	AN8	C	806	808	Right-handed 310
Helix 126	AN9	C	812	816	Right-handed 310
Helix 127	AO1	C	817	829	Right-handed alpha
Helix 128	AO2	C	874	876	Right-handed 310
Helix 129	AO3	C	884	891	Right-handed 310
Helix 130	AO4	C	906	911	Right-handed alpha
Helix 131	AO5	C	916	921	Right-handed 310
Helix 132	AO6	C	922	930	Right-handed alpha
Helix 133	AO7	C	932	942	Right-handed alpha
Helix 134	AO8	C	946	957	Right-handed alpha
Helix 135	AO9	C	965	970	Right-handed 310
Helix 136	AP1	C	984	986	Right-handed 310
Helix 137	AP2	C	987	992	Right-handed alpha
Helix 138	AP3	C	995	1008	Right-handed alpha
Helix 139	AP4	D	21	54	Right-handed alpha
Helix 140	AP5	D	92	106	Right-handed alpha
Helix 141	AP6	D	109	134	Right-handed alpha
Helix 142	AP7	D	147	171	Right-handed alpha
Helix 143	AP8	D	173	179	Right-handed alpha
Helix 144	AP9	D	180	200	Right-handed alpha
Helix 145	AQ1	D	206	215	Right-handed 310
Helix 146	AQ2	D	216	224	Right-handed alpha
Helix 147	AQ3	D	229	260	Right-handed alpha
Helix 148	AQ4	D	261	265	Right-handed 310
Helix 149	AQ5	D	273	286	Right-handed alpha
Helix 150	AQ6	D	297	328	Right-handed alpha
Helix 151	AQ7	D	352	364	Right-handed alpha
Helix 152	AQ8	D	384	394	Right-handed alpha
Helix 153	AQ9	D	407	414	Right-handed alpha
Helix 154	AR1	D	415	419	Right-handed 310
Helix 155	AR2	D	432	451	Right-handed alpha
Helix 156	AR3	D	462	470	Right-handed alpha
Helix 157	AR4	D	486	500	Right-handed alpha
Helix 158	AR5	D	502	512	Right-handed alpha
Helix 159	AR6	D	523	533	Right-handed alpha
Helix 160	AR7	D	549	560	Right-handed alpha
Helix 161	AR8	D	601	610	Right-handed alpha
Helix 162	AR9	D	699	704	Right-handed alpha
Helix 163	AS1	D	706	713	Right-handed alpha
Helix 164	AS2	D	734	739	Right-handed alpha
Helix 165	AS3	D	740	743	Right-handed 310
Helix 166	AS4	D	747	751	Right-handed 310
Helix 167	AS5	D	759	767	Right-handed alpha
Helix 168	AS6	D	768	770	Right-handed 310
Helix 169	AS7	D	785	793	Right-handed alpha
Helix 170	AS8	D	794	797	Right-handed 310
Helix 171	AS9	D	806	808	Right-handed 310
Helix 172	AT1	D	812	816	Right-handed 310
Helix 173	AT2	D	817	829	Right-handed alpha
Helix 174	AT3	D	874	876	Right-handed 310
Helix 175	AT4	D	884	891	Right-handed 310
Helix 176	AT5	D	906	911	Right-handed alpha
Helix 177	AT6	D	916	921	Right-handed 310
Helix 178	AT7	D	922	930	Right-handed alpha
Helix 179	AT8	D	932	942	Right-handed alpha
Helix 180	AT9	D	946	957	Right-handed alpha
Helix 181	AU1	D	965	970	Right-handed 310
Helix 182	AU2	D	984	986	Right-handed 310
Helix 183	AU3	D	987	992	Right-handed alpha
Helix 184	AU4	D	995	1008	Right-handed alpha
Helix 185	AU5	E	258	297	Right-handed alpha
Helix 186	AU6	F	258	297	Right-handed alpha
Helix 187	AU7	G	258	297	Right-handed alpha
Helix 188	AU8	H	258	297	Right-handed alpha

There are 24 sheets in PDB entry 8S3E. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	139	141	first strand
Strand 2	A	201	203	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	398	402	first strand
Strand 2	A	373	379	parallel
Strand 3	A	343	349	parallel
Strand 4	A	422	425	parallel
Strand 5	A	456	460	parallel
Strand 6	A	482	485	parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	535	540	first strand
Strand 2	A	594	599	anti-parallel
Strand 3	A	564	568	anti-parallel
Strand 4	A	580	581	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	776	780	first strand
Strand 2	A	753	758	parallel
Strand 3	A	718	724	parallel
Strand 4	A	799	804	parallel
Strand 5	A	878	881	parallel
Strand 6	A	914	915	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	831	832	first strand
Strand 2	A	871	872	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	976	981	first strand
Strand 2	A	1048	1053	anti-parallel
Strand 3	A	1013	1017	anti-parallel
Strand 4	A	1031	1035	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	139	141	first strand
Strand 2	B	201	203	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	398	402	first strand
Strand 2	B	373	379	parallel
Strand 3	B	343	349	parallel
Strand 4	B	422	425	parallel
Strand 5	B	456	460	parallel
Strand 6	B	482	485	parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	535	540	first strand
Strand 2	B	594	599	anti-parallel
Strand 3	B	564	568	anti-parallel
Strand 4	B	580	581	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	776	780	first strand
Strand 2	B	753	758	parallel
Strand 3	B	718	724	parallel
Strand 4	B	799	804	parallel
Strand 5	B	878	881	parallel
Strand 6	B	914	915	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	831	832	first strand
Strand 2	B	871	872	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	976	981	first strand
Strand 2	B	1048	1053	anti-parallel
Strand 3	B	1013	1017	anti-parallel
Strand 4	B	1031	1035	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	139	141	first strand
Strand 2	C	201	203	anti-parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	398	402	first strand
Strand 2	C	373	379	parallel
Strand 3	C	343	349	parallel
Strand 4	C	422	425	parallel
Strand 5	C	456	460	parallel
Strand 6	C	482	485	parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	535	540	first strand
Strand 2	C	594	599	anti-parallel
Strand 3	C	564	568	anti-parallel
Strand 4	C	580	581	anti-parallel

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There are 6 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	776	780	first strand
Strand 2	C	753	758	parallel
Strand 3	C	718	724	parallel
Strand 4	C	799	804	parallel
Strand 5	C	878	881	parallel
Strand 6	C	914	915	parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	831	832	first strand
Strand 2	C	871	872	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	976	981	first strand
Strand 2	C	1048	1053	anti-parallel
Strand 3	C	1013	1017	anti-parallel
Strand 4	C	1031	1035	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	139	141	first strand
Strand 2	D	201	203	anti-parallel

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There are 6 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	398	402	first strand
Strand 2	D	373	379	parallel
Strand 3	D	343	349	parallel
Strand 4	D	422	425	parallel
Strand 5	D	456	460	parallel
Strand 6	D	482	485	parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	535	540	first strand
Strand 2	D	594	599	anti-parallel
Strand 3	D	564	568	anti-parallel
Strand 4	D	580	581	anti-parallel

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There are 6 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	776	780	first strand
Strand 2	D	753	758	parallel
Strand 3	D	718	724	parallel
Strand 4	D	799	804	parallel
Strand 5	D	878	881	parallel
Strand 6	D	914	915	parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	831	832	first strand
Strand 2	D	871	872	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	976	981	first strand
Strand 2	D	1048	1053	anti-parallel
Strand 3	D	1013	1017	anti-parallel
Strand 4	D	1031	1035	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8S3E

Analysis of interatomic Contacts of Structural Units in PDB entry:
8S3E