Analysis of interatomic Contacts of Structural Units in PDB entry:
8S41

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8S41 entry

There are 9 chains in PDB entry 8S41 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	HIS 187
F	MET 1	HIS 187
G	MET 1	HIS 187
L	MET 1	HIS 187
Q	MET 1	HIS 187
V	MET 1	HIS 187
X	MET 1	HIS 187
a	MET 1	HIS 187
d	MET 1	HIS 187

There are 97 helices in PDB entry 8S41. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	15	29	Right-handed alpha
Helix 2	AA2	A	31	38	Right-handed alpha
Helix 3	AA3	A	45	62	Right-handed alpha
Helix 4	AA4	A	64	72	Right-handed alpha
Helix 5	AA5	A	76	89	Right-handed alpha
Helix 6	AA6	A	93	106	Right-handed alpha
Helix 7	AA7	A	113	131	Right-handed alpha
Helix 8	AA8	A	136	147	Right-handed alpha
Helix 9	AA9	A	149	156	Right-handed alpha
Helix 10	AB1	A	162	167	Right-handed alpha
Helix 11	AB2	A	168	187	Right-handed alpha
Helix 12	AB3	F	15	30	Right-handed alpha
Helix 13	AB4	F	33	38	Right-handed alpha
Helix 14	AB5	F	45	63	Right-handed alpha
Helix 15	AB6	F	64	71	Right-handed alpha
Helix 16	AB7	F	76	88	Right-handed alpha
Helix 17	AB8	F	92	106	Right-handed alpha
Helix 18	AB9	F	113	131	Right-handed alpha
Helix 19	AC1	F	136	148	Right-handed alpha
Helix 20	AC2	F	149	161	Right-handed alpha
Helix 21	AC3	F	168	187	Right-handed alpha
Helix 22	AC4	G	15	30	Right-handed alpha
Helix 23	AC5	G	31	38	Right-handed alpha
Helix 24	AC6	G	45	63	Right-handed alpha
Helix 25	AC7	G	64	71	Right-handed alpha
Helix 26	AC8	G	76	90	Right-handed alpha
Helix 27	AC9	G	92	106	Right-handed alpha
Helix 28	AD1	G	113	131	Right-handed alpha
Helix 29	AD2	G	136	147	Right-handed alpha
Helix 30	AD3	G	152	160	Right-handed alpha
Helix 31	AD4	G	168	187	Right-handed alpha
Helix 32	AD5	L	15	30	Right-handed alpha
Helix 33	AD6	L	32	38	Right-handed alpha
Helix 34	AD7	L	45	62	Right-handed alpha
Helix 35	AD8	L	64	71	Right-handed alpha
Helix 36	AD9	L	76	89	Right-handed alpha
Helix 37	AE1	L	92	106	Right-handed alpha
Helix 38	AE2	L	113	132	Right-handed alpha
Helix 39	AE3	L	136	148	Right-handed alpha
Helix 40	AE4	L	149	151	Right-handed 310
Helix 41	AE5	L	152	162	Right-handed alpha
Helix 42	AE6	L	168	187	Right-handed alpha
Helix 43	AE7	Q	15	30	Right-handed alpha
Helix 44	AE8	Q	32	38	Right-handed alpha
Helix 45	AE9	Q	45	62	Right-handed alpha
Helix 46	AF1	Q	64	71	Right-handed alpha
Helix 47	AF2	Q	76	90	Right-handed alpha
Helix 48	AF3	Q	92	106	Right-handed alpha
Helix 49	AF4	Q	113	132	Right-handed alpha
Helix 50	AF5	Q	136	148	Right-handed alpha
Helix 51	AF6	Q	149	161	Right-handed alpha
Helix 52	AF7	Q	168	187	Right-handed alpha
Helix 53	AF8	V	15	30	Right-handed alpha
Helix 54	AF9	V	32	39	Right-handed alpha
Helix 55	AG1	V	45	63	Right-handed alpha
Helix 56	AG2	V	65	71	Right-handed alpha
Helix 57	AG3	V	76	89	Right-handed alpha
Helix 58	AG4	V	92	106	Right-handed alpha
Helix 59	AG5	V	113	131	Right-handed alpha
Helix 60	AG6	V	136	147	Right-handed alpha
Helix 61	AG7	V	149	161	Right-handed alpha
Helix 62	AG8	V	162	167	Right-handed 310
Helix 63	AG9	V	168	187	Right-handed alpha
Helix 64	AH1	X	15	30	Right-handed alpha
Helix 65	AH2	X	31	36	Right-handed 310
Helix 66	AH3	X	45	62	Right-handed alpha
Helix 67	AH4	X	64	70	Right-handed 310
Helix 68	AH5	X	76	89	Right-handed alpha
Helix 69	AH6	X	92	106	Right-handed alpha
Helix 70	AH7	X	113	131	Right-handed alpha
Helix 71	AH8	X	136	148	Right-handed alpha
Helix 72	AH9	X	149	151	Right-handed 310
Helix 73	AI1	X	152	162	Right-handed alpha
Helix 74	AI2	X	168	187	Right-handed alpha
Helix 75	AI3	a	15	30	Right-handed alpha
Helix 76	AI4	a	32	37	Right-handed alpha
Helix 77	AI5	a	45	63	Right-handed alpha
Helix 78	AI6	a	64	71	Right-handed alpha
Helix 79	AI7	a	76	89	Right-handed alpha
Helix 80	AI8	a	92	106	Right-handed alpha
Helix 81	AI9	a	113	131	Right-handed alpha
Helix 82	AJ1	a	136	148	Right-handed alpha
Helix 83	AJ2	a	149	151	Right-handed 310
Helix 84	AJ3	a	152	160	Right-handed alpha
Helix 85	AJ4	a	168	187	Right-handed alpha
Helix 86	AJ5	d	15	30	Right-handed alpha
Helix 87	AJ6	d	33	38	Right-handed alpha
Helix 88	AJ7	d	45	63	Right-handed alpha
Helix 89	AJ8	d	64	66	Right-handed 310
Helix 90	AJ9	d	67	72	Right-handed alpha
Helix 91	AK1	d	76	89	Right-handed alpha
Helix 92	AK2	d	92	106	Right-handed alpha
Helix 93	AK3	d	113	131	Right-handed alpha
Helix 94	AK4	d	136	148	Right-handed alpha
Helix 95	AK5	d	149	151	Right-handed 310
Helix 96	AK6	d	152	158	Right-handed alpha
Helix 97	AK7	d	168	187	Right-handed alpha

There are no sheets in PDB entry 8S41

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8S41

Analysis of interatomic Contacts of Structural Units in PDB entry:
8S41