Analysis of interatomic Contacts of Structural Units in PDB entry:
8S47


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8S47 entry

There are 2 chains in PDB entry 8S47 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 2THR 155
B
 ARG 4THR 157
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 10 helices in PDB entry 8S47. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
2 26Right-handed alpha
Helix 2
AA2
A
40 45Right-handed alpha
Helix 3
AA3
A
55 63Right-handed alpha
Helix 4
AA4
A
101 114Right-handed alpha
Helix 5
AA5
A
141 154Right-handed alpha
Helix 6
AA6
B
5 26Right-handed alpha
Helix 7
AA7
B
40 45Right-handed alpha
Helix 8
AA8
B
55 63Right-handed alpha
Helix 9
AA9
B
101 114Right-handed alpha
Helix 10
AB1
B
141 154Right-handed alpha
Back to top of page

There are 2 sheets in PDB entry 8S47. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
48 52first strand
Strand 2
A
80 86anti-parallel
Strand 3
A
73 77anti-parallel
Strand 4
A
30 34parallel
Strand 5
A
117 121anti-parallel
Strand 6
A
128 132anti-parallel
Strand 7
A
135 137anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
48 53first strand
Strand 2
B
80 86anti-parallel
Strand 3
B
73 77anti-parallel
Strand 4
B
30 34parallel
Strand 5
B
117 121anti-parallel
Strand 6
B
128 132anti-parallel
Strand 7
B
135 137anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il