Analysis of interatomic Contacts of Structural Units in PDB entry:
8S4J


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8S4J entry

There is 1 chain in PDB entry 8S4J (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 29LYS 328
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 8S4J. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
44 58Right-handed alpha
Helix 2
AA2
A
59 64Right-handed alpha
Helix 3
AA3
A
74 84Right-handed alpha
Helix 4
AA4
A
94 103Right-handed alpha
Helix 5
AA5
A
104 108Right-handed 310
Helix 6
AA6
A
139 144Right-handed 310
Helix 7
AA7
A
155 169Right-handed alpha
Helix 8
AA8
A
171 175Right-handed 310
Helix 9
AA9
A
182 184Right-handed 310
Helix 10
AB1
A
185 190Right-handed alpha
Helix 11
AB2
A
206 217Right-handed alpha
Helix 12
AB3
A
225 235Right-handed alpha
Helix 13
AB4
A
271 284Right-handed alpha
Helix 14
AB5
A
285 290Right-handed alpha
Helix 15
AB6
A
291 292Right-handed 310
Helix 16
AB7
A
293 297Right-handed 310
Helix 17
AB8
A
300 307Right-handed alpha
Helix 18
AB9
A
314 324Right-handed alpha
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There are 2 sheets in PDB entry 8S4J. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
66 70first strand
Strand 2
A
33 37parallel
Strand 3
A
89 93parallel
Strand 4
A
255 267anti-parallel
Strand 5
A
116 131anti-parallel
Strand 6
A
219 221anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
177 179first strand
Strand 2
A
147 149parallel
Strand 3
A
197 201parallel
Strand 4
A
116 131anti-parallel
Strand 5
A
255 267anti-parallel
Strand 6
A
239 243anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il