Analysis of interatomic Contacts of Structural Units in PDB entry:
8S4P

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8S4P entry

There are 8 chains in PDB entry 8S4P (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 2	ASN 414
B	THR 2	PRO 413
C	THR 2	SER 415
D	TRP 3	SER 415
E	TRP 3	ASN 414
F	THR 2	PRO 413
G	MET 1	ASN 414
H	TRP 3	ASN 414

There are150 helices in PDB entry 8S4P. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	39	43	Right-handed 310
Helix 2	AA2	A	72	84	Right-handed alpha
Helix 3	AA3	A	98	102	Right-handed 310
Helix 4	AA4	A	112	114	Right-handed 310
Helix 5	AA5	A	115	128	Right-handed alpha
Helix 6	AA6	A	140	144	Right-handed 310
Helix 7	AA7	A	148	152	Right-handed 310
Helix 8	AA8	A	157	161	Right-handed 310
Helix 9	AA9	A	186	208	Right-handed alpha
Helix 10	AB1	A	220	227	Right-handed alpha
Helix 11	AB2	A	240	260	Right-handed alpha
Helix 12	AB3	A	286	301	Right-handed alpha
Helix 13	AB4	A	326	338	Right-handed alpha
Helix 14	AB5	A	351	363	Right-handed alpha
Helix 15	AB6	A	370	376	Right-handed alpha
Helix 16	AB7	A	378	387	Right-handed alpha
Helix 17	AB8	A	394	399	Right-handed alpha
Helix 18	AB9	B	39	43	Right-handed 310
Helix 19	AC1	B	72	84	Right-handed alpha
Helix 20	AC2	B	98	102	Right-handed 310
Helix 21	AC3	B	112	114	Right-handed 310
Helix 22	AC4	B	115	129	Right-handed alpha
Helix 23	AC5	B	140	144	Right-handed 310
Helix 24	AC6	B	148	152	Right-handed 310
Helix 25	AC7	B	157	161	Right-handed 310
Helix 26	AC8	B	186	208	Right-handed alpha
Helix 27	AC9	B	220	227	Right-handed alpha
Helix 28	AD1	B	240	245	Right-handed alpha
Helix 29	AD2	B	245	260	Right-handed alpha
Helix 30	AD3	B	286	301	Right-handed alpha
Helix 31	AD4	B	326	338	Right-handed alpha
Helix 32	AD5	B	351	362	Right-handed alpha
Helix 33	AD6	B	370	376	Right-handed alpha
Helix 34	AD7	B	378	388	Right-handed alpha
Helix 35	AD8	B	394	399	Right-handed alpha
Helix 36	AD9	C	39	43	Right-handed 310
Helix 37	AE1	C	72	84	Right-handed alpha
Helix 38	AE2	C	98	102	Right-handed 310
Helix 39	AE3	C	112	114	Right-handed 310
Helix 40	AE4	C	115	129	Right-handed alpha
Helix 41	AE5	C	140	144	Right-handed 310
Helix 42	AE6	C	148	152	Right-handed 310
Helix 43	AE7	C	157	161	Right-handed 310
Helix 44	AE8	C	186	208	Right-handed alpha
Helix 45	AE9	C	220	227	Right-handed alpha
Helix 46	AF1	C	240	245	Right-handed alpha
Helix 47	AF2	C	245	260	Right-handed alpha
Helix 48	AF3	C	286	301	Right-handed alpha
Helix 49	AF4	C	326	338	Right-handed alpha
Helix 50	AF5	C	351	362	Right-handed alpha
Helix 51	AF6	C	370	376	Right-handed alpha
Helix 52	AF7	C	378	387	Right-handed alpha
Helix 53	AF8	C	394	399	Right-handed alpha
Helix 54	AF9	C	400	402	Right-handed 310
Helix 55	AG1	D	39	43	Right-handed 310
Helix 56	AG2	D	72	84	Right-handed alpha
Helix 57	AG3	D	98	102	Right-handed 310
Helix 58	AG4	D	112	114	Right-handed 310
Helix 59	AG5	D	115	129	Right-handed alpha
Helix 60	AG6	D	140	144	Right-handed 310
Helix 61	AG7	D	148	152	Right-handed 310
Helix 62	AG8	D	157	161	Right-handed 310
Helix 63	AG9	D	186	208	Right-handed alpha
Helix 64	AH1	D	220	227	Right-handed alpha
Helix 65	AH2	D	240	245	Right-handed alpha
Helix 66	AH3	D	245	260	Right-handed alpha
Helix 67	AH4	D	286	301	Right-handed alpha
Helix 68	AH5	D	326	338	Right-handed alpha
Helix 69	AH6	D	339	341	Right-handed 310
Helix 70	AH7	D	351	363	Right-handed alpha
Helix 71	AH8	D	370	376	Right-handed alpha
Helix 72	AH9	D	378	388	Right-handed alpha
Helix 73	AI1	D	394	399	Right-handed alpha
Helix 74	AI2	E	39	43	Right-handed 310
Helix 75	AI3	E	72	84	Right-handed alpha
Helix 76	AI4	E	98	102	Right-handed 310
Helix 77	AI5	E	112	114	Right-handed 310
Helix 78	AI6	E	115	129	Right-handed alpha
Helix 79	AI7	E	140	144	Right-handed 310
Helix 80	AI8	E	148	152	Right-handed 310
Helix 81	AI9	E	157	161	Right-handed 310
Helix 82	AJ1	E	186	208	Right-handed alpha
Helix 83	AJ2	E	220	227	Right-handed alpha
Helix 84	AJ3	E	240	245	Right-handed alpha
Helix 85	AJ4	E	245	260	Right-handed alpha
Helix 86	AJ5	E	286	301	Right-handed alpha
Helix 87	AJ6	E	326	338	Right-handed alpha
Helix 88	AJ7	E	351	362	Right-handed alpha
Helix 89	AJ8	E	370	376	Right-handed alpha
Helix 90	AJ9	E	378	387	Right-handed alpha
Helix 91	AK1	E	394	399	Right-handed alpha
Helix 92	AK2	E	400	402	Right-handed 310
Helix 93	AK3	F	39	43	Right-handed 310
Helix 94	AK4	F	72	84	Right-handed alpha
Helix 95	AK5	F	98	102	Right-handed 310
Helix 96	AK6	F	112	114	Right-handed 310
Helix 97	AK7	F	115	129	Right-handed alpha
Helix 98	AK8	F	140	144	Right-handed 310
Helix 99	AK9	F	148	152	Right-handed 310
Helix 100	AL1	F	157	161	Right-handed 310
Helix 101	AL2	F	186	208	Right-handed alpha
Helix 102	AL3	F	220	227	Right-handed alpha
Helix 103	AL4	F	240	245	Right-handed alpha
Helix 104	AL5	F	245	260	Right-handed alpha
Helix 105	AL6	F	286	301	Right-handed alpha
Helix 106	AL7	F	326	338	Right-handed alpha
Helix 107	AL8	F	351	362	Right-handed alpha
Helix 108	AL9	F	370	376	Right-handed alpha
Helix 109	AM1	F	378	387	Right-handed alpha
Helix 110	AM2	F	394	399	Right-handed alpha
Helix 111	AM3	G	39	43	Right-handed 310
Helix 112	AM4	G	72	84	Right-handed alpha
Helix 113	AM5	G	98	102	Right-handed 310
Helix 114	AM6	G	112	114	Right-handed 310
Helix 115	AM7	G	115	129	Right-handed alpha
Helix 116	AM8	G	140	144	Right-handed 310
Helix 117	AM9	G	148	152	Right-handed 310
Helix 118	AN1	G	157	161	Right-handed 310
Helix 119	AN2	G	186	208	Right-handed alpha
Helix 120	AN3	G	220	227	Right-handed alpha
Helix 121	AN4	G	240	245	Right-handed alpha
Helix 122	AN5	G	245	260	Right-handed alpha
Helix 123	AN6	G	286	301	Right-handed alpha
Helix 124	AN7	G	326	338	Right-handed alpha
Helix 125	AN8	G	339	341	Right-handed 310
Helix 126	AN9	G	351	362	Right-handed alpha
Helix 127	AO1	G	370	376	Right-handed alpha
Helix 128	AO2	G	378	387	Right-handed alpha
Helix 129	AO3	G	394	399	Right-handed alpha
Helix 130	AO4	G	400	402	Right-handed 310
Helix 131	AO5	H	39	43	Right-handed 310
Helix 132	AO6	H	72	84	Right-handed alpha
Helix 133	AO7	H	98	102	Right-handed 310
Helix 134	AO8	H	112	114	Right-handed 310
Helix 135	AO9	H	115	129	Right-handed alpha
Helix 136	AP1	H	140	144	Right-handed 310
Helix 137	AP2	H	148	152	Right-handed 310
Helix 138	AP3	H	157	161	Right-handed 310
Helix 139	AP4	H	186	208	Right-handed alpha
Helix 140	AP5	H	220	227	Right-handed alpha
Helix 141	AP6	H	240	245	Right-handed alpha
Helix 142	AP7	H	245	260	Right-handed alpha
Helix 143	AP8	H	286	301	Right-handed alpha
Helix 144	AP9	H	326	338	Right-handed alpha
Helix 145	AQ1	H	339	341	Right-handed 310
Helix 146	AQ2	H	351	362	Right-handed alpha
Helix 147	AQ3	H	370	376	Right-handed alpha
Helix 148	AQ4	H	378	387	Right-handed alpha
Helix 149	AQ5	H	394	399	Right-handed alpha
Helix 150	AQ6	H	400	402	Right-handed 310

There are 32 sheets in PDB entry 8S4P. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	45	47	first strand
Strand 2	A	50	52	anti-parallel

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There are 10 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	108	109	first strand
Strand 2	A	89	96	parallel
Strand 3	A	133	138	parallel
Strand 4	A	212	216	parallel
Strand 5	A	265	270	parallel
Strand 6	A	305	309	parallel
Strand 7	A	342	346	parallel
Strand 8	A	366	369	parallel
Strand 9	A	56	58	parallel
Strand 10	A	89	96	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	168	169	first strand
Strand 2	A	183	184	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	391	392	first strand
Strand 2	A	410	411	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	45	47	first strand
Strand 2	B	50	52	anti-parallel

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There are 10 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	108	109	first strand
Strand 2	B	89	96	parallel
Strand 3	B	133	138	parallel
Strand 4	B	212	216	parallel
Strand 5	B	265	270	parallel
Strand 6	B	305	309	parallel
Strand 7	B	342	346	parallel
Strand 8	B	366	369	parallel
Strand 9	B	56	58	parallel
Strand 10	B	89	96	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	168	169	first strand
Strand 2	B	183	184	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	391	392	first strand
Strand 2	B	410	411	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	45	47	first strand
Strand 2	C	50	52	anti-parallel

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There are 9 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	56	58	first strand
Strand 2	C	89	96	parallel
Strand 3	C	133	138	parallel
Strand 4	C	212	216	parallel
Strand 5	C	265	270	parallel
Strand 6	C	305	309	parallel
Strand 7	C	342	346	parallel
Strand 8	C	366	369	parallel
Strand 9	C	56	58	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	168	169	first strand
Strand 2	C	183	184	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	391	392	first strand
Strand 2	C	410	411	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	45	47	first strand
Strand 2	D	50	52	anti-parallel

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There are 9 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	56	58	first strand
Strand 2	D	89	96	parallel
Strand 3	D	133	138	parallel
Strand 4	D	212	216	parallel
Strand 5	D	265	270	parallel
Strand 6	D	305	309	parallel
Strand 7	D	342	346	parallel
Strand 8	D	366	369	parallel
Strand 9	D	56	58	parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	168	169	first strand
Strand 2	D	183	184	parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	391	392	first strand
Strand 2	D	410	411	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	45	47	first strand
Strand 2	E	50	52	anti-parallel

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There are 10 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	108	109	first strand
Strand 2	E	89	96	parallel
Strand 3	E	133	138	parallel
Strand 4	E	212	216	parallel
Strand 5	E	265	270	parallel
Strand 6	E	305	309	parallel
Strand 7	E	342	345	parallel
Strand 8	E	366	369	parallel
Strand 9	E	56	58	parallel
Strand 10	E	89	96	parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	168	169	first strand
Strand 2	E	183	184	parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	391	392	first strand
Strand 2	E	410	411	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	45	47	first strand
Strand 2	F	50	52	anti-parallel

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There are 9 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	56	58	first strand
Strand 2	F	89	96	parallel
Strand 3	F	133	138	parallel
Strand 4	F	212	216	parallel
Strand 5	F	265	270	parallel
Strand 6	F	305	309	parallel
Strand 7	F	342	346	parallel
Strand 8	F	366	369	parallel
Strand 9	F	56	58	parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	168	169	first strand
Strand 2	F	183	184	parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	391	392	first strand
Strand 2	F	410	411	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	45	47	first strand
Strand 2	G	50	52	anti-parallel

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There are 10 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	108	109	first strand
Strand 2	G	89	96	parallel
Strand 3	G	133	138	parallel
Strand 4	G	211	216	parallel
Strand 5	G	265	270	parallel
Strand 6	G	305	309	parallel
Strand 7	G	342	345	parallel
Strand 8	G	366	369	parallel
Strand 9	G	56	58	parallel
Strand 10	G	89	96	parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	168	169	first strand
Strand 2	G	183	184	parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	391	392	first strand
Strand 2	G	410	411	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	45	47	first strand
Strand 2	H	50	52	anti-parallel

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There are 9 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	56	58	first strand
Strand 2	H	89	96	parallel
Strand 3	H	133	138	parallel
Strand 4	H	212	215	parallel
Strand 5	H	265	270	parallel
Strand 6	H	305	309	parallel
Strand 7	H	342	345	parallel
Strand 8	H	366	369	parallel
Strand 9	H	56	58	parallel

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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	168	169	first strand
Strand 2	H	183	184	parallel

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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	391	392	first strand
Strand 2	H	410	411	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8S4P

Analysis of interatomic Contacts of Structural Units in PDB entry:
8S4P